Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25675

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliP and fliO overlap by 1 nucleotidesfliO and fliN are separated by 2 nucleotidesfliN and fliM overlap by 4 nucleotides OKFHMN_25665: fliP - flagellar type III secretion system pore protein FliP, at 4,963,972 to 4,964,709 fliP OKFHMN_25670: fliO - flagellar type III secretion system protein FliO, at 4,964,709 to 4,965,074 fliO OKFHMN_25675: fliN - flagellar motor switch protein FliN, at 4,965,077 to 4,965,490 fliN OKFHMN_25680: fliM - flagellar motor switch protein FliM, at 4,965,487 to 4,966,491 fliM Position (kb) 4965 4966Strain fitness (log2 ratio) -1 0 1 2at 4964.270 kb on - strand, within fliPat 4964.270 kb on - strand, within fliPat 4965.068 kb on + strandat 4965.139 kb on - strand, within fliNat 4965.665 kb on - strand, within fliMat 4965.683 kb on - strand, within fliMat 4965.922 kb on - strand, within fliMat 4965.997 kb on - strand, within fliM

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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4,964,270 - fliP OKFHMN_25665 0.40 -0.5
4,964,270 - fliP OKFHMN_25665 0.40 +1.8
4,965,068 + -1.0
4,965,139 - fliN OKFHMN_25675 0.15 +0.8
4,965,665 - fliM OKFHMN_25680 0.18 -0.3
4,965,683 - fliM OKFHMN_25680 0.20 +1.1
4,965,922 - fliM OKFHMN_25680 0.43 -1.5
4,965,997 - fliM OKFHMN_25680 0.51 -0.1

Or see this region's nucleotide sequence