Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nudI and yfaZ are separated by 278 nucleotides yfaZ and yfaY are separated by 99 nucleotides yfaY and rhmR are separated by 219 nucleotides
OKFHMN_23005: nudI - nucleoside triphosphatase NudI, at 4,479,177 to 4,479,602
nudI
OKFHMN_23010: yfaZ - Outer membrane protein YfaZ, at 4,479,881 to 4,480,423
yfaZ
OKFHMN_23015: yfaY - nicotinamide mononucleotide deamidase-related protein YfaY, at 4,480,523 to 4,481,725
yfaY
OKFHMN_23020: rhmR - Uncharacterized HTH-type transcriptional regulator RhmR, at 4,481,945 to 4,482,727
rhmR
Position (kb) 4480
4481
4482 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4479.553 kb on + strand, within nudI at 4479.553 kb on + strand, within nudI at 4479.616 kb on - strand at 4479.719 kb on - strand at 4479.829 kb on - strand at 4479.974 kb on + strand, within yfaZ at 4479.975 kb on - strand, within yfaZ at 4480.042 kb on + strand, within yfaZ at 4480.229 kb on + strand, within yfaZ at 4480.232 kb on + strand, within yfaZ at 4480.232 kb on + strand, within yfaZ at 4480.233 kb on - strand, within yfaZ at 4480.474 kb on + strand at 4480.489 kb on + strand at 4480.491 kb on + strand at 4480.519 kb on - strand at 4480.519 kb on - strand at 4480.542 kb on + strand at 4480.564 kb on - strand at 4480.564 kb on - strand at 4480.632 kb on + strand at 4480.671 kb on + strand, within yfaY at 4480.753 kb on - strand, within yfaY at 4480.851 kb on + strand, within yfaY at 4480.909 kb on + strand, within yfaY at 4480.970 kb on - strand, within yfaY at 4480.994 kb on - strand, within yfaY at 4481.073 kb on + strand, within yfaY at 4481.077 kb on + strand, within yfaY at 4481.125 kb on - strand, within yfaY at 4481.560 kb on - strand, within yfaY at 4481.928 kb on + strand at 4481.929 kb on - strand at 4482.022 kb on + strand at 4482.058 kb on + strand, within rhmR at 4482.071 kb on + strand, within rhmR at 4482.072 kb on - strand, within rhmR at 4482.072 kb on - strand, within rhmR at 4482.109 kb on + strand, within rhmR at 4482.243 kb on + strand, within rhmR at 4482.363 kb on + strand, within rhmR at 4482.368 kb on - strand, within rhmR at 4482.410 kb on - strand, within rhmR at 4482.584 kb on - strand, within rhmR at 4482.676 kb on + strand at 4482.725 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 4,479,553 + nudI OKFHMN_23005 0.88 -3.1 4,479,553 + nudI OKFHMN_23005 0.88 +0.7 4,479,616 - +0.4 4,479,719 - -0.1 4,479,829 - -0.2 4,479,974 + yfaZ OKFHMN_23010 0.17 -0.0 4,479,975 - yfaZ OKFHMN_23010 0.17 +0.2 4,480,042 + yfaZ OKFHMN_23010 0.30 +0.6 4,480,229 + yfaZ OKFHMN_23010 0.64 +1.7 4,480,232 + yfaZ OKFHMN_23010 0.65 +0.2 4,480,232 + yfaZ OKFHMN_23010 0.65 +0.1 4,480,233 - yfaZ OKFHMN_23010 0.65 +0.2 4,480,474 + +0.3 4,480,489 + -0.9 4,480,491 + +1.6 4,480,519 - -0.5 4,480,519 - +0.5 4,480,542 + -0.4 4,480,564 - -0.1 4,480,564 - +0.4 4,480,632 + -1.3 4,480,671 + yfaY OKFHMN_23015 0.12 +0.6 4,480,753 - yfaY OKFHMN_23015 0.19 -0.7 4,480,851 + yfaY OKFHMN_23015 0.27 -0.0 4,480,909 + yfaY OKFHMN_23015 0.32 +0.2 4,480,970 - yfaY OKFHMN_23015 0.37 +0.3 4,480,994 - yfaY OKFHMN_23015 0.39 -1.0 4,481,073 + yfaY OKFHMN_23015 0.46 +0.2 4,481,077 + yfaY OKFHMN_23015 0.46 +0.2 4,481,125 - yfaY OKFHMN_23015 0.50 -0.8 4,481,560 - yfaY OKFHMN_23015 0.86 +2.0 4,481,928 + +0.6 4,481,929 - +0.3 4,482,022 + -0.0 4,482,058 + rhmR OKFHMN_23020 0.14 -0.1 4,482,071 + rhmR OKFHMN_23020 0.16 +0.8 4,482,072 - rhmR OKFHMN_23020 0.16 -0.4 4,482,072 - rhmR OKFHMN_23020 0.16 -0.5 4,482,109 + rhmR OKFHMN_23020 0.21 -0.1 4,482,243 + rhmR OKFHMN_23020 0.38 +0.1 4,482,363 + rhmR OKFHMN_23020 0.53 +0.3 4,482,368 - rhmR OKFHMN_23020 0.54 -0.8 4,482,410 - rhmR OKFHMN_23020 0.59 +0.7 4,482,584 - rhmR OKFHMN_23020 0.82 +0.0 4,482,676 + -0.1 4,482,725 + +0.2
Or see this region's nucleotide sequence