Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09855

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttssB and OKFHMN_09855 are separated by 34 nucleotidesOKFHMN_09855 and tssC are separated by 50 nucleotides OKFHMN_09850: tssB - Type VI secretion system protein TssB, at 1,839,744 to 1,840,244 tssB OKFHMN_09855: OKFHMN_09855 - hypothetical protein, at 1,840,279 to 1,840,503 _09855 OKFHMN_09860: tssC - type VI secretion system contractile sheath large subunit, at 1,840,554 to 1,841,945 tssC Position (kb) 1840 1841Strain fitness (log2 ratio) -1 0 1 2at 1839.785 kb on + strandat 1839.788 kb on + strandat 1839.791 kb on + strandat 1839.798 kb on + strand, within tssBat 1839.875 kb on + strand, within tssBat 1839.875 kb on + strand, within tssBat 1840.164 kb on - strand, within tssBat 1840.309 kb on + strand, within OKFHMN_09855at 1840.310 kb on - strand, within OKFHMN_09855at 1840.346 kb on - strand, within OKFHMN_09855at 1840.422 kb on + strand, within OKFHMN_09855at 1840.554 kb on - strandat 1840.982 kb on + strand, within tssCat 1840.982 kb on + strand, within tssCat 1841.050 kb on - strand, within tssCat 1841.050 kb on - strand, within tssCat 1841.091 kb on + strand, within tssCat 1841.091 kb on + strand, within tssCat 1841.276 kb on + strand, within tssCat 1841.321 kb on + strand, within tssCat 1841.343 kb on + strand, within tssCat 1841.376 kb on + strand, within tssCat 1841.376 kb on + strand, within tssCat 1841.377 kb on - strand, within tssCat 1841.388 kb on - strand, within tssC

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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1,839,785 + +0.3
1,839,788 + +0.9
1,839,791 + +0.3
1,839,798 + tssB OKFHMN_09850 0.11 -0.0
1,839,875 + tssB OKFHMN_09850 0.26 +0.8
1,839,875 + tssB OKFHMN_09850 0.26 -0.4
1,840,164 - tssB OKFHMN_09850 0.84 +0.3
1,840,309 + OKFHMN_09855 0.13 -0.1
1,840,310 - OKFHMN_09855 0.14 +0.4
1,840,346 - OKFHMN_09855 0.30 +0.4
1,840,422 + OKFHMN_09855 0.64 +0.7
1,840,554 - +2.3
1,840,982 + tssC OKFHMN_09860 0.31 +0.4
1,840,982 + tssC OKFHMN_09860 0.31 -0.6
1,841,050 - tssC OKFHMN_09860 0.36 +1.7
1,841,050 - tssC OKFHMN_09860 0.36 +0.5
1,841,091 + tssC OKFHMN_09860 0.39 -0.4
1,841,091 + tssC OKFHMN_09860 0.39 -0.5
1,841,276 + tssC OKFHMN_09860 0.52 -0.6
1,841,321 + tssC OKFHMN_09860 0.55 -0.8
1,841,343 + tssC OKFHMN_09860 0.57 +1.2
1,841,376 + tssC OKFHMN_09860 0.59 +1.7
1,841,376 + tssC OKFHMN_09860 0.59 -0.0
1,841,377 - tssC OKFHMN_09860 0.59 +0.9
1,841,388 - tssC OKFHMN_09860 0.60 +0.7

Or see this region's nucleotide sequence