Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_04405 and OKFHMN_04410 overlap by 4 nucleotides OKFHMN_04410 and lolE are separated by 8 nucleotides lolE and OKFHMN_04420 are separated by 0 nucleotides OKFHMN_04420 and lolD overlap by 17 nucleotides
OKFHMN_04405: OKFHMN_04405 - hypothetical protein, at 710,409 to 711,797
_04405
OKFHMN_04410: OKFHMN_04410 - Outer membrane lipoprotein-sorting protein, at 711,794 to 712,582
_04410
OKFHMN_04415: lolE - ABC transporter permease, at 712,591 to 713,901
lolE
OKFHMN_04420: OKFHMN_04420 - Uncharacterized function, at 713,902 to 714,558
_04420
OKFHMN_04425: lolD - lipoprotein-releasing system ATP-binding protein LolD, at 714,542 to 715,249
lolD
Position (kb) 712
713
714 Strain fitness (log2 ratio) -2
-1
0
1 at 711.817 kb on - strand at 712.000 kb on - strand, within OKFHMN_04410 at 712.264 kb on - strand, within OKFHMN_04410 at 712.637 kb on - strand at 712.770 kb on + strand, within lolE at 713.003 kb on + strand, within lolE at 713.226 kb on - strand, within lolE at 713.469 kb on - strand, within lolE at 713.469 kb on - strand, within lolE at 713.490 kb on - strand, within lolE at 713.904 kb on - strand at 714.345 kb on - strand, within OKFHMN_04420
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 711,817 - -0.1 712,000 - OKFHMN_04410 0.26 -0.7 712,264 - OKFHMN_04410 0.60 -0.5 712,637 - +0.9 712,770 + lolE OKFHMN_04415 0.14 +0.4 713,003 + lolE OKFHMN_04415 0.31 -0.5 713,226 - lolE OKFHMN_04415 0.48 -0.4 713,469 - lolE OKFHMN_04415 0.67 -1.6 713,469 - lolE OKFHMN_04415 0.67 +1.0 713,490 - lolE OKFHMN_04415 0.69 +0.8 713,904 - -1.4 714,345 - OKFHMN_04420 0.67 -1.8
Or see this region's nucleotide sequence