Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arnA and arnC overlap by 1 nucleotides arnC and arnB are separated by 3 nucleotides arnB and ais are separated by 289 nucleotides ais and nudI are separated by 38 nucleotides
OKFHMN_22985: arnA - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 4,474,135 to 4,476,117
arnA
OKFHMN_22990: arnC - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 4,476,117 to 4,477,085
arnC
OKFHMN_22995: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 4,477,089 to 4,478,246
arnB
OKFHMN_23000: ais - Lipopolysaccharide core heptose(II)-phosphate phosphatase, at 4,478,536 to 4,479,138
ais
OKFHMN_23005: nudI - nucleoside triphosphatase NudI, at 4,479,177 to 4,479,602
nudI
Position (kb) 4477
4478
4479 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4476.096 kb on - strand at 4476.272 kb on + strand, within arnC at 4476.273 kb on - strand, within arnC at 4476.341 kb on + strand, within arnC at 4476.341 kb on + strand, within arnC at 4476.341 kb on + strand, within arnC at 4476.342 kb on - strand, within arnC at 4476.384 kb on - strand, within arnC at 4476.422 kb on - strand, within arnC at 4476.466 kb on + strand, within arnC at 4476.518 kb on + strand, within arnC at 4476.611 kb on - strand, within arnC at 4476.802 kb on - strand, within arnC at 4476.864 kb on - strand, within arnC at 4476.876 kb on + strand, within arnC at 4476.916 kb on - strand, within arnC at 4476.916 kb on - strand, within arnC at 4476.916 kb on - strand, within arnC at 4476.916 kb on - strand, within arnC at 4476.916 kb on - strand, within arnC at 4476.916 kb on - strand, within arnC at 4476.918 kb on - strand, within arnC at 4477.035 kb on - strand at 4477.035 kb on - strand at 4477.065 kb on - strand at 4477.090 kb on + strand at 4477.232 kb on - strand, within arnB at 4477.278 kb on - strand, within arnB at 4477.278 kb on - strand, within arnB at 4477.290 kb on + strand, within arnB at 4477.349 kb on + strand, within arnB at 4477.527 kb on - strand, within arnB at 4477.527 kb on - strand, within arnB at 4477.527 kb on - strand, within arnB at 4477.677 kb on - strand, within arnB at 4477.753 kb on - strand, within arnB at 4477.753 kb on - strand, within arnB at 4477.821 kb on - strand, within arnB at 4477.840 kb on + strand, within arnB at 4477.840 kb on + strand, within arnB at 4477.841 kb on - strand, within arnB at 4478.856 kb on + strand, within ais at 4478.917 kb on - strand, within ais at 4479.027 kb on + strand, within ais
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 4,476,096 - +0.1 4,476,272 + arnC OKFHMN_22990 0.16 +0.8 4,476,273 - arnC OKFHMN_22990 0.16 -0.1 4,476,341 + arnC OKFHMN_22990 0.23 +0.7 4,476,341 + arnC OKFHMN_22990 0.23 +1.0 4,476,341 + arnC OKFHMN_22990 0.23 +1.0 4,476,342 - arnC OKFHMN_22990 0.23 -2.3 4,476,384 - arnC OKFHMN_22990 0.28 +0.0 4,476,422 - arnC OKFHMN_22990 0.31 -0.2 4,476,466 + arnC OKFHMN_22990 0.36 +0.1 4,476,518 + arnC OKFHMN_22990 0.41 +0.4 4,476,611 - arnC OKFHMN_22990 0.51 -0.0 4,476,802 - arnC OKFHMN_22990 0.71 -1.1 4,476,864 - arnC OKFHMN_22990 0.77 -1.1 4,476,876 + arnC OKFHMN_22990 0.78 +0.0 4,476,916 - arnC OKFHMN_22990 0.82 +0.3 4,476,916 - arnC OKFHMN_22990 0.82 -1.9 4,476,916 - arnC OKFHMN_22990 0.82 +2.5 4,476,916 - arnC OKFHMN_22990 0.82 +0.1 4,476,916 - arnC OKFHMN_22990 0.82 -0.4 4,476,916 - arnC OKFHMN_22990 0.82 -0.2 4,476,918 - arnC OKFHMN_22990 0.83 +0.1 4,477,035 - -1.0 4,477,035 - -0.6 4,477,065 - +0.5 4,477,090 + +0.7 4,477,232 - arnB OKFHMN_22995 0.12 -2.0 4,477,278 - arnB OKFHMN_22995 0.16 +1.4 4,477,278 - arnB OKFHMN_22995 0.16 +0.7 4,477,290 + arnB OKFHMN_22995 0.17 -0.2 4,477,349 + arnB OKFHMN_22995 0.22 +0.8 4,477,527 - arnB OKFHMN_22995 0.38 +0.6 4,477,527 - arnB OKFHMN_22995 0.38 -0.1 4,477,527 - arnB OKFHMN_22995 0.38 +1.3 4,477,677 - arnB OKFHMN_22995 0.51 +1.3 4,477,753 - arnB OKFHMN_22995 0.57 +0.2 4,477,753 - arnB OKFHMN_22995 0.57 -0.8 4,477,821 - arnB OKFHMN_22995 0.63 +1.1 4,477,840 + arnB OKFHMN_22995 0.65 +0.7 4,477,840 + arnB OKFHMN_22995 0.65 +0.7 4,477,841 - arnB OKFHMN_22995 0.65 -0.2 4,478,856 + ais OKFHMN_23000 0.53 +0.8 4,478,917 - ais OKFHMN_23000 0.63 +2.4 4,479,027 + ais OKFHMN_23000 0.81 -0.3
Or see this region's nucleotide sequence