Experiment: EV219
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yoaC and yoaB are separated by 421 nucleotides yoaB and yoaA are separated by 128 nucleotides yoaA and tsaB are separated by 57 nucleotides tsaB and yeaY are separated by 39 nucleotides
OKFHMN_26570: yoaC - Uncharacterized protein YoaC, at 5,114,158 to 5,114,457
yoaC
OKFHMN_26575: yoaB - RutC family protein YoaB, at 5,114,879 to 5,115,226
yoaB
OKFHMN_26580: yoaA - putative ATP-dependent DNA helicase YoaA, at 5,115,355 to 5,117,265
yoaA
OKFHMN_26585: tsaB - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 5,117,323 to 5,118,018
tsaB
OKFHMN_26590: yeaY - Slp family lipoprotein YeaY, at 5,118,058 to 5,118,639
yeaY
Position (kb) 5115
5116
5117
5118 Strain fitness (log2 ratio) -1
0
1 at 5114.408 kb on - strand, within yoaC at 5114.444 kb on - strand at 5114.724 kb on - strand at 5114.993 kb on - strand, within yoaB at 5115.177 kb on - strand, within yoaB at 5115.180 kb on - strand, within yoaB at 5115.209 kb on - strand at 5115.594 kb on + strand, within yoaA at 5116.429 kb on + strand, within yoaA at 5116.505 kb on + strand, within yoaA at 5116.636 kb on + strand, within yoaA at 5116.637 kb on - strand, within yoaA at 5116.759 kb on - strand, within yoaA at 5116.768 kb on - strand, within yoaA at 5117.004 kb on - strand, within yoaA at 5117.278 kb on + strand at 5117.979 kb on + strand at 5118.023 kb on + strand at 5118.208 kb on + strand, within yeaY
Per-strain Table
Position Strand Gene LocusTag Fraction EV219 remove 5,114,408 - yoaC OKFHMN_26570 0.83 +0.8 5,114,444 - +1.1 5,114,724 - -1.1 5,114,993 - yoaB OKFHMN_26575 0.33 -0.4 5,115,177 - yoaB OKFHMN_26575 0.86 +0.4 5,115,180 - yoaB OKFHMN_26575 0.86 +0.2 5,115,209 - +1.1 5,115,594 + yoaA OKFHMN_26580 0.13 +0.0 5,116,429 + yoaA OKFHMN_26580 0.56 +1.2 5,116,505 + yoaA OKFHMN_26580 0.60 -1.6 5,116,636 + yoaA OKFHMN_26580 0.67 +0.3 5,116,637 - yoaA OKFHMN_26580 0.67 -0.9 5,116,759 - yoaA OKFHMN_26580 0.73 +0.3 5,116,768 - yoaA OKFHMN_26580 0.74 +0.2 5,117,004 - yoaA OKFHMN_26580 0.86 -0.6 5,117,278 + -1.0 5,117,979 + +0.3 5,118,023 + +1.0 5,118,208 + yeaY OKFHMN_26590 0.26 -1.0
Or see this region's nucleotide sequence