Experiment: EV219
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yceG and pabC are separated by 2 nucleotides pabC and fabF are separated by 119 nucleotides fabF and acpP are separated by 87 nucleotides acpP and fabG are separated by 210 nucleotides
OKFHMN_03555: yceG - cell division protein YceG, at 561,878 to 562,900
yceG
OKFHMN_03560: pabC - aminodeoxychorismate lyase, at 562,903 to 563,712
pabC
OKFHMN_03565: fabF - beta-ketoacyl-ACP synthase II, at 563,832 to 565,073
fabF
OKFHMN_03570: acpP - acyl carrier protein, at 565,161 to 565,397
acpP
OKFHMN_03575: fabG - 3-oxoacyl-ACP reductase FabG, at 565,608 to 566,342
fabG
Position (kb) 563
564
565
566 Strain fitness (log2 ratio) -2
-1
0
1
2 at 562.872 kb on - strand at 562.940 kb on + strand at 562.981 kb on + strand at 563.013 kb on + strand, within pabC at 563.073 kb on - strand, within pabC at 563.151 kb on - strand, within pabC at 563.156 kb on - strand, within pabC at 563.156 kb on - strand, within pabC at 563.156 kb on - strand, within pabC at 563.156 kb on - strand, within pabC at 563.439 kb on - strand, within pabC at 563.692 kb on - strand at 563.694 kb on - strand at 563.774 kb on + strand at 563.813 kb on - strand at 563.885 kb on + strand at 564.017 kb on - strand, within fabF at 564.153 kb on - strand, within fabF at 564.272 kb on - strand, within fabF at 564.355 kb on - strand, within fabF at 564.690 kb on - strand, within fabF at 565.553 kb on - strand at 565.553 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV219 remove 562,872 - +0.1 562,940 + -1.2 562,981 + +0.4 563,013 + pabC OKFHMN_03560 0.14 +1.0 563,073 - pabC OKFHMN_03560 0.21 +0.1 563,151 - pabC OKFHMN_03560 0.31 +0.2 563,156 - pabC OKFHMN_03560 0.31 +1.5 563,156 - pabC OKFHMN_03560 0.31 +0.1 563,156 - pabC OKFHMN_03560 0.31 -1.5 563,156 - pabC OKFHMN_03560 0.31 +0.9 563,439 - pabC OKFHMN_03560 0.66 -2.3 563,692 - -1.7 563,694 - -0.3 563,774 + +0.5 563,813 - +0.4 563,885 + -0.5 564,017 - fabF OKFHMN_03565 0.15 +1.8 564,153 - fabF OKFHMN_03565 0.26 +0.7 564,272 - fabF OKFHMN_03565 0.35 -0.6 564,355 - fabF OKFHMN_03565 0.42 +1.0 564,690 - fabF OKFHMN_03565 0.69 +2.5 565,553 - +0.1 565,553 - -0.0
Or see this region's nucleotide sequence