Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03430

Experiment: EV219

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_03425 and potC are separated by 166 nucleotidespotC and potD overlap by 4 nucleotides OKFHMN_03425: OKFHMN_03425 - integrase, at 533,369 to 534,487 _03425 OKFHMN_03430: potC - spermidine/putrescine ABC transporter permease PotC, at 534,654 to 535,448 potC OKFHMN_03435: potD - spermidine/putrescine ABC transporter substrate-binding protein PotD, at 535,445 to 536,491 potD Position (kb) 534 535 536Strain fitness (log2 ratio) -1 0 1 2at 534.034 kb on + strand, within OKFHMN_03425at 534.185 kb on - strand, within OKFHMN_03425at 534.218 kb on + strand, within OKFHMN_03425at 534.443 kb on + strandat 534.481 kb on + strandat 534.482 kb on - strandat 534.497 kb on + strandat 535.010 kb on + strand, within potCat 535.010 kb on + strand, within potCat 535.360 kb on + strand, within potCat 535.532 kb on + strandat 535.600 kb on + strand, within potDat 535.673 kb on + strand, within potDat 535.697 kb on + strand, within potDat 535.697 kb on + strand, within potDat 535.700 kb on + strand, within potDat 536.071 kb on + strand, within potD

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV219
remove
534,034 + OKFHMN_03425 0.59 +0.1
534,185 - OKFHMN_03425 0.73 +0.9
534,218 + OKFHMN_03425 0.76 -0.9
534,443 + -0.3
534,481 + -0.1
534,482 - -0.3
534,497 + +0.5
535,010 + potC OKFHMN_03430 0.45 +0.9
535,010 + potC OKFHMN_03430 0.45 -0.7
535,360 + potC OKFHMN_03430 0.89 +0.4
535,532 + +0.1
535,600 + potD OKFHMN_03435 0.15 +2.7
535,673 + potD OKFHMN_03435 0.22 -0.4
535,697 + potD OKFHMN_03435 0.24 -0.2
535,697 + potD OKFHMN_03435 0.24 +0.3
535,700 + potD OKFHMN_03435 0.24 -0.5
536,071 + potD OKFHMN_03435 0.60 +0.1

Or see this region's nucleotide sequence