Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03375

Experiment: EV219

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_03355 and OKFHMN_03360 overlap by 47 nucleotidesOKFHMN_03360 and OKFHMN_03365 overlap by 11 nucleotidesOKFHMN_03365 and OKFHMN_03370 overlap by 4 nucleotidesOKFHMN_03370 and OKFHMN_03375 overlap by 4 nucleotidesOKFHMN_03375 and OKFHMN_03380 are separated by 33 nucleotidesOKFHMN_03380 and eCs1768 are separated by 31 nucleotides OKFHMN_03355: OKFHMN_03355 - hypothetical protein, at 526,615 to 526,932 _03355 OKFHMN_03360: OKFHMN_03360 - DUF4752 domain-containing protein, at 526,886 to 527,203 _03360 OKFHMN_03365: OKFHMN_03365 - DUF4406 domain-containing protein, at 527,193 to 527,495 _03365 OKFHMN_03370: OKFHMN_03370 - DNA-binding protein, at 527,492 to 527,809 _03370 OKFHMN_03375: OKFHMN_03375 - DUF1627 domain-containing protein, at 527,806 to 528,522 _03375 OKFHMN_03380: OKFHMN_03380 - replication protein, at 528,556 to 528,978 _03380 OKFHMN_03385: eCs1768 - phage replisome organizer, at 529,010 to 530,047 eCs1768 Position (kb) 527 528 529Strain fitness (log2 ratio) -2 -1 0 1at 526.832 kb on - strand, within OKFHMN_03355at 526.832 kb on - strand, within OKFHMN_03355at 526.834 kb on - strand, within OKFHMN_03355at 526.863 kb on - strand, within OKFHMN_03355at 526.881 kb on - strand, within OKFHMN_03355at 526.965 kb on - strand, within OKFHMN_03360at 527.078 kb on - strand, within OKFHMN_03360at 527.128 kb on + strand, within OKFHMN_03360at 527.129 kb on - strand, within OKFHMN_03360at 527.300 kb on - strand, within OKFHMN_03365at 527.345 kb on - strand, within OKFHMN_03365at 527.345 kb on - strand, within OKFHMN_03365at 527.524 kb on - strand, within OKFHMN_03370at 527.769 kb on - strand, within OKFHMN_03370at 527.836 kb on - strandat 528.448 kb on - strand, within OKFHMN_03375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV219
remove
526,832 - OKFHMN_03355 0.68 +0.3
526,832 - OKFHMN_03355 0.68 +0.5
526,834 - OKFHMN_03355 0.69 +0.9
526,863 - OKFHMN_03355 0.78 -0.2
526,881 - OKFHMN_03355 0.84 -0.3
526,965 - OKFHMN_03360 0.25 -0.3
527,078 - OKFHMN_03360 0.60 -0.3
527,128 + OKFHMN_03360 0.76 +0.5
527,129 - OKFHMN_03360 0.76 +0.3
527,300 - OKFHMN_03365 0.35 +1.7
527,345 - OKFHMN_03365 0.50 -0.4
527,345 - OKFHMN_03365 0.50 -0.4
527,524 - OKFHMN_03370 0.10 -0.3
527,769 - OKFHMN_03370 0.87 -0.1
527,836 - -1.9
528,448 - OKFHMN_03375 0.90 +0.4

Or see this region's nucleotide sequence