Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF880

Experiment: LB_plus_SM_buffer with Ffm_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF879 and GFF880 are separated by 226 nucleotidesGFF880 and GFF881 are separated by 174 nucleotides GFF879 - Inorganic pyrophosphatase (EC 3.6.1.1), at 58,090 to 58,620 GFF879 GFF880 - Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11), at 58,847 to 59,845 GFF880 GFF881 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-), at 60,020 to 61,399 GFF881 Position (kb) 58 59 60Strain fitness (log2 ratio) -3 -2 -1 0 1at 58.748 kb on - strandat 58.827 kb on - strandat 58.841 kb on + strandat 58.849 kb on - strandat 58.958 kb on - strand, within GFF880at 58.958 kb on - strand, within GFF880at 58.966 kb on + strand, within GFF880at 59.077 kb on - strand, within GFF880at 59.130 kb on + strand, within GFF880at 59.142 kb on + strand, within GFF880at 59.217 kb on + strand, within GFF880at 59.222 kb on - strand, within GFF880at 59.266 kb on + strand, within GFF880at 59.266 kb on + strand, within GFF880at 59.266 kb on + strand, within GFF880at 59.267 kb on - strand, within GFF880at 59.267 kb on - strand, within GFF880at 59.307 kb on + strand, within GFF880at 59.364 kb on + strand, within GFF880at 59.365 kb on - strand, within GFF880at 59.374 kb on - strand, within GFF880at 59.533 kb on - strand, within GFF880at 59.533 kb on - strand, within GFF880at 59.603 kb on - strand, within GFF880at 59.825 kb on - strandat 60.141 kb on + strandat 60.142 kb on - strandat 60.177 kb on - strand, within GFF881at 60.283 kb on + strand, within GFF881at 60.283 kb on + strand, within GFF881at 60.284 kb on - strand, within GFF881at 60.504 kb on - strand, within GFF881

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 15 MOI
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58,748 - -0.0
58,827 - -0.4
58,841 + -0.6
58,849 - -1.0
58,958 - GFF880 0.11 -0.2
58,958 - GFF880 0.11 -0.5
58,966 + GFF880 0.12 -0.3
59,077 - GFF880 0.23 -1.9
59,130 + GFF880 0.28 -1.2
59,142 + GFF880 0.30 -0.4
59,217 + GFF880 0.37 +0.1
59,222 - GFF880 0.38 -0.6
59,266 + GFF880 0.42 +0.2
59,266 + GFF880 0.42 -0.4
59,266 + GFF880 0.42 -0.1
59,267 - GFF880 0.42 -0.5
59,267 - GFF880 0.42 -0.3
59,307 + GFF880 0.46 -0.5
59,364 + GFF880 0.52 -0.1
59,365 - GFF880 0.52 -3.1
59,374 - GFF880 0.53 -0.1
59,533 - GFF880 0.69 +0.3
59,533 - GFF880 0.69 -2.0
59,603 - GFF880 0.76 -0.2
59,825 - -0.4
60,141 + -0.2
60,142 - +0.4
60,177 - GFF881 0.11 +0.6
60,283 + GFF881 0.19 -0.4
60,283 + GFF881 0.19 -0.3
60,284 - GFF881 0.19 -0.6
60,504 - GFF881 0.35 +0.3

Or see this region's nucleotide sequence