Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF787

Experiment: LB_plus_SM_buffer with Ffm_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF786 and GFF787 are separated by 499 nucleotidesGFF787 and GFF788 are separated by 112 nucleotides GFF786 - Adenine-specific methyltransferase (EC 2.1.1.72), at 135,888 to 136,037 GFF786 GFF787 - FIG00642546: hypothetical protein, at 136,537 to 136,905 GFF787 GFF788 - ATP-dependent RNA helicase YejH, at 137,018 to 138,646 GFF788 Position (kb) 136 137Strain fitness (log2 ratio) -2 -1 0 1at 135.697 kb on - strandat 135.795 kb on - strandat 135.806 kb on - strandat 136.148 kb on - strandat 136.149 kb on - strandat 136.253 kb on - strandat 136.255 kb on - strandat 136.462 kb on - strandat 136.467 kb on - strandat 136.471 kb on - strandat 136.484 kb on - strandat 136.619 kb on - strand, within GFF787at 136.683 kb on + strand, within GFF787at 136.705 kb on - strand, within GFF787at 136.860 kb on + strand, within GFF787at 136.914 kb on - strandat 137.093 kb on - strandat 137.105 kb on + strandat 137.105 kb on + strandat 137.106 kb on - strandat 137.206 kb on - strand, within GFF788at 137.240 kb on + strand, within GFF788at 137.449 kb on - strand, within GFF788at 137.464 kb on + strand, within GFF788at 137.492 kb on + strand, within GFF788at 137.492 kb on + strand, within GFF788at 137.493 kb on - strand, within GFF788at 137.493 kb on - strand, within GFF788at 137.510 kb on - strand, within GFF788at 137.559 kb on - strand, within GFF788at 137.671 kb on + strand, within GFF788at 137.725 kb on + strand, within GFF788at 137.794 kb on + strand, within GFF788

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 15 MOI
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135,697 - -1.8
135,795 - -0.1
135,806 - -0.0
136,148 - -1.2
136,149 - +0.3
136,253 - -0.6
136,255 - -0.1
136,462 - -0.7
136,467 - +0.2
136,471 - +1.1
136,484 - +0.0
136,619 - GFF787 0.22 -0.4
136,683 + GFF787 0.40 -0.9
136,705 - GFF787 0.46 +0.2
136,860 + GFF787 0.88 -1.0
136,914 - -0.5
137,093 - +0.3
137,105 + +1.6
137,105 + +0.6
137,106 - -0.9
137,206 - GFF788 0.12 +0.6
137,240 + GFF788 0.14 +0.0
137,449 - GFF788 0.26 -0.3
137,464 + GFF788 0.27 +0.0
137,492 + GFF788 0.29 -0.1
137,492 + GFF788 0.29 -0.2
137,493 - GFF788 0.29 +1.0
137,493 - GFF788 0.29 -0.1
137,510 - GFF788 0.30 -0.0
137,559 - GFF788 0.33 +0.4
137,671 + GFF788 0.40 -2.5
137,725 + GFF788 0.43 -0.7
137,794 + GFF788 0.48 +0.4

Or see this region's nucleotide sequence