Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF747

Experiment: LB_plus_SM_buffer with Ffm_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF745 and GFF746 are separated by 71 nucleotidesGFF746 and GFF747 are separated by 312 nucleotidesGFF747 and GFF748 are separated by 53 nucleotidesGFF748 and GFF749 overlap by 4 nucleotides GFF745 - Deoxyribose operon repressor, DeoR family, at 103,808 to 104,566 GFF745 GFF746 - Putative permease, at 104,638 to 105,246 GFF746 GFF747 - Multidrug translocase MdfA, at 105,559 to 106,791 GFF747 GFF748 - Protein ybjI, at 106,845 to 107,660 GFF748 GFF749 - Putative transport protein/putative regulator, at 107,657 to 108,868 GFF749 Position (kb) 105 106 107Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 104.566 kb on + strandat 104.583 kb on + strandat 104.617 kb on + strandat 104.617 kb on + strandat 104.618 kb on - strandat 104.788 kb on - strand, within GFF746at 104.803 kb on + strand, within GFF746at 104.804 kb on - strand, within GFF746at 105.312 kb on + strandat 105.343 kb on - strandat 105.388 kb on + strandat 105.393 kb on + strandat 105.430 kb on + strandat 105.431 kb on - strandat 105.558 kb on + strandat 105.632 kb on - strandat 105.642 kb on + strandat 105.647 kb on - strandat 105.698 kb on - strand, within GFF747at 105.754 kb on - strand, within GFF747at 105.761 kb on + strand, within GFF747at 105.883 kb on - strand, within GFF747at 105.937 kb on + strand, within GFF747at 106.328 kb on - strand, within GFF747at 106.404 kb on + strand, within GFF747at 106.440 kb on + strand, within GFF747at 106.495 kb on + strand, within GFF747at 106.496 kb on - strand, within GFF747at 106.496 kb on - strand, within GFF747at 106.496 kb on - strand, within GFF747at 106.524 kb on - strand, within GFF747at 106.663 kb on - strand, within GFF747at 106.873 kb on - strandat 106.876 kb on - strandat 106.890 kb on - strandat 107.106 kb on + strand, within GFF748at 107.272 kb on + strand, within GFF748at 107.515 kb on + strand, within GFF748at 107.573 kb on - strand, within GFF748at 107.599 kb on + strandat 107.776 kb on - strandat 107.776 kb on - strandat 107.790 kb on + strand, within GFF749

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 15 MOI
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104,566 + -0.0
104,583 + +0.5
104,617 + -0.1
104,617 + -0.3
104,618 - +0.3
104,788 - GFF746 0.25 +1.5
104,803 + GFF746 0.27 -0.8
104,804 - GFF746 0.27 +0.4
105,312 + +0.5
105,343 - +2.0
105,388 + -0.8
105,393 + -0.6
105,430 + +0.2
105,431 - -0.9
105,558 + -1.0
105,632 - +1.0
105,642 + +0.2
105,647 - +0.1
105,698 - GFF747 0.11 -0.0
105,754 - GFF747 0.16 +0.6
105,761 + GFF747 0.16 -1.2
105,883 - GFF747 0.26 -0.3
105,937 + GFF747 0.31 +0.8
106,328 - GFF747 0.62 -0.7
106,404 + GFF747 0.69 -0.0
106,440 + GFF747 0.71 -2.4
106,495 + GFF747 0.76 -0.7
106,496 - GFF747 0.76 -0.8
106,496 - GFF747 0.76 -1.0
106,496 - GFF747 0.76 +0.4
106,524 - GFF747 0.78 -1.3
106,663 - GFF747 0.90 -0.2
106,873 - +0.0
106,876 - +1.4
106,890 - +0.1
107,106 + GFF748 0.32 -0.2
107,272 + GFF748 0.52 -2.8
107,515 + GFF748 0.82 +0.1
107,573 - GFF748 0.89 +0.3
107,599 + +0.3
107,776 - -0.0
107,776 - +0.3
107,790 + GFF749 0.11 -0.1

Or see this region's nucleotide sequence