Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF713

Experiment: LB_plus_SM_buffer with Ffm_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF711 and GFF712 are separated by 0 nucleotidesGFF712 and GFF713 are separated by 36 nucleotidesGFF713 and GFF714 are separated by 242 nucleotidesGFF714 and GFF715 overlap by 4 nucleotides GFF711 - FIG00732228: membrane protein, at 67,176 to 68,756 GFF711 GFF712 - hypothetical protein, at 68,757 to 68,885 GFF712 GFF713 - FIG01047037: hypothetical protein, at 68,922 to 69,092 GFF713 GFF714 - Mn-dependent transcriptional regulator MntR, at 69,335 to 69,808 GFF714 GFF715 - Putative membrane protein, at 69,805 to 70,917 GFF715 Position (kb) 68 69 70Strain fitness (log2 ratio) -1 0 1at 67.990 kb on + strand, within GFF711at 68.101 kb on + strand, within GFF711at 68.101 kb on + strand, within GFF711at 68.102 kb on - strand, within GFF711at 68.149 kb on - strand, within GFF711at 68.249 kb on + strand, within GFF711at 68.255 kb on + strand, within GFF711at 68.423 kb on + strand, within GFF711at 68.424 kb on - strand, within GFF711at 68.425 kb on + strand, within GFF711at 68.425 kb on + strand, within GFF711at 68.465 kb on + strand, within GFF711at 68.495 kb on + strand, within GFF711at 68.633 kb on - strandat 68.808 kb on - strand, within GFF712at 68.808 kb on - strand, within GFF712at 69.066 kb on - strand, within GFF713at 69.077 kb on + strandat 69.078 kb on - strandat 69.129 kb on - strandat 69.129 kb on - strandat 69.149 kb on + strandat 69.149 kb on + strandat 69.150 kb on - strandat 69.151 kb on + strandat 69.151 kb on + strandat 69.201 kb on - strandat 69.201 kb on - strandat 69.201 kb on - strandat 69.205 kb on - strandat 69.211 kb on - strandat 69.212 kb on + strandat 69.278 kb on + strandat 69.278 kb on + strandat 69.390 kb on + strand, within GFF714at 69.391 kb on - strand, within GFF714at 69.391 kb on - strand, within GFF714at 69.448 kb on - strand, within GFF714at 69.456 kb on - strand, within GFF714at 69.696 kb on + strand, within GFF714at 69.938 kb on + strand, within GFF715

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 15 MOI
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67,990 + GFF711 0.51 -1.2
68,101 + GFF711 0.59 +0.7
68,101 + GFF711 0.59 -0.5
68,102 - GFF711 0.59 -1.0
68,149 - GFF711 0.62 +0.6
68,249 + GFF711 0.68 +0.4
68,255 + GFF711 0.68 +0.4
68,423 + GFF711 0.79 +0.0
68,424 - GFF711 0.79 -0.2
68,425 + GFF711 0.79 -0.9
68,425 + GFF711 0.79 +0.3
68,465 + GFF711 0.82 +1.6
68,495 + GFF711 0.83 -0.2
68,633 - +0.1
68,808 - GFF712 0.40 -0.3
68,808 - GFF712 0.40 +0.4
69,066 - GFF713 0.84 -0.6
69,077 + -0.4
69,078 - -0.3
69,129 - -0.4
69,129 - -0.7
69,149 + -0.3
69,149 + -0.1
69,150 - -0.1
69,151 + -1.0
69,151 + +0.9
69,201 - +0.0
69,201 - -0.1
69,201 - -0.4
69,205 - +0.3
69,211 - +0.0
69,212 + +0.9
69,278 + +0.7
69,278 + -1.1
69,390 + GFF714 0.12 -0.6
69,391 - GFF714 0.12 +1.6
69,391 - GFF714 0.12 -1.2
69,448 - GFF714 0.24 -0.8
69,456 - GFF714 0.26 +1.4
69,696 + GFF714 0.76 -0.4
69,938 + GFF715 0.12 +0.7

Or see this region's nucleotide sequence