Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3990

Experiment: LB_plus_SM_buffer with Ffm_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3989 and GFF3990 are separated by 88 nucleotidesGFF3990 and GFF3991 are separated by 246 nucleotidesGFF3991 and GFF3992 are separated by 459 nucleotides GFF3989 - Error-prone, lesion bypass DNA polymerase V (UmuC), at 263,693 to 264,961 GFF3989 GFF3990 - hypothetical protein, at 265,050 to 265,169 GFF3990 GFF3991 - Cold shock protein CspG, at 265,416 to 265,628 GFF3991 GFF3992 - Outer membrane protein C precursor, at 266,088 to 267,284 GFF3992 Position (kb) 265 266Strain fitness (log2 ratio) -1 0 1at 264.102 kb on + strand, within GFF3989at 264.268 kb on + strand, within GFF3989at 264.268 kb on + strand, within GFF3989at 264.323 kb on - strand, within GFF3989at 264.471 kb on - strand, within GFF3989at 264.495 kb on - strand, within GFF3989at 264.659 kb on - strand, within GFF3989at 264.860 kb on + strandat 264.895 kb on + strandat 264.924 kb on - strandat 264.946 kb on - strandat 264.955 kb on + strandat 264.959 kb on + strandat 265.063 kb on - strand, within GFF3990at 265.130 kb on - strand, within GFF3990at 265.240 kb on + strandat 265.786 kb on + strandat 265.786 kb on + strandat 265.903 kb on + strandat 266.040 kb on - strandat 266.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 15 MOI
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264,102 + GFF3989 0.32 +0.1
264,268 + GFF3989 0.45 +0.0
264,268 + GFF3989 0.45 +0.1
264,323 - GFF3989 0.50 -0.4
264,471 - GFF3989 0.61 +0.6
264,495 - GFF3989 0.63 -0.5
264,659 - GFF3989 0.76 +0.3
264,860 + +0.5
264,895 + +0.1
264,924 - -1.6
264,946 - -1.0
264,955 + -1.4
264,959 + +0.2
265,063 - GFF3990 0.11 -0.5
265,130 - GFF3990 0.67 -0.3
265,240 + +0.1
265,786 + -0.0
265,786 + +0.3
265,903 + +0.4
266,040 - +0.7
266,150 - -0.8

Or see this region's nucleotide sequence