Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3826

Experiment: LB_plus_SM_buffer with Ffm_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3825 and GFF3826 are separated by 277 nucleotidesGFF3826 and GFF3827 are separated by 278 nucleotidesGFF3827 and GFF3828 are separated by 55 nucleotides GFF3825 - Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like, at 95,278 to 96,387 GFF3825 GFF3826 - FIG00510335: hypothetical protein, at 96,665 to 96,946 GFF3826 GFF3827 - probable fimbrial chain protein stcA, at 97,225 to 97,755 GFF3827 GFF3828 - Uncharacterized fimbrial chaperone YehC precursor, at 97,811 to 98,494 GFF3828 Position (kb) 96 97Strain fitness (log2 ratio) -1 0 1 2 3at 95.784 kb on + strand, within GFF3825at 95.964 kb on + strand, within GFF3825at 96.114 kb on + strand, within GFF3825at 96.115 kb on - strand, within GFF3825at 96.115 kb on - strand, within GFF3825at 96.115 kb on - strand, within GFF3825at 96.228 kb on + strand, within GFF3825at 96.228 kb on + strand, within GFF3825at 96.302 kb on - strandat 96.386 kb on - strandat 96.434 kb on - strandat 96.687 kb on + strandat 96.693 kb on + strandat 96.829 kb on + strand, within GFF3826

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 15 MOI
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95,784 + GFF3825 0.46 +0.1
95,964 + GFF3825 0.62 -0.2
96,114 + GFF3825 0.75 -0.2
96,115 - GFF3825 0.75 +0.2
96,115 - GFF3825 0.75 -0.3
96,115 - GFF3825 0.75 +1.0
96,228 + GFF3825 0.86 +0.9
96,228 + GFF3825 0.86 +1.4
96,302 - -0.2
96,386 - -0.2
96,434 - +0.3
96,687 + -0.1
96,693 + +3.2
96,829 + GFF3826 0.58 -0.6

Or see this region's nucleotide sequence