Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF368

Experiment: LB_plus_SM_buffer with Ffm_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF366 and GFF367 are separated by 78 nucleotidesGFF367 and GFF368 are separated by 77 nucleotidesGFF368 and GFF369 are separated by 107 nucleotidesGFF369 and GFF370 overlap by 20 nucleotides GFF366 - Ribonuclease PH (EC 2.7.7.56), at 85,683 to 86,399 GFF366 GFF367 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 86,478 to 87,119 GFF367 GFF368 - Transcriptional regulator SlmA, TetR family, at 87,197 to 87,793 GFF368 GFF369 - 'Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)' transl_table=11, at 87,901 to 88,356 GFF369 GFF370 - Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5), at 88,337 to 89,560 GFF370 Position (kb) 87 88Strain fitness (log2 ratio) -2 -1 0 1 2at 86.282 kb on - strand, within GFF366at 86.488 kb on - strandat 86.546 kb on + strand, within GFF367at 86.598 kb on - strand, within GFF367at 86.825 kb on - strand, within GFF367at 86.868 kb on - strand, within GFF367at 86.894 kb on + strand, within GFF367at 86.997 kb on + strand, within GFF367at 87.005 kb on + strand, within GFF367at 87.006 kb on - strand, within GFF367at 87.006 kb on - strand, within GFF367at 87.006 kb on - strand, within GFF367at 87.006 kb on - strand, within GFF367at 87.006 kb on - strand, within GFF367at 87.151 kb on - strandat 87.151 kb on - strandat 87.290 kb on - strand, within GFF368at 87.343 kb on - strand, within GFF368at 87.375 kb on - strand, within GFF368at 87.844 kb on - strandat 87.875 kb on + strandat 87.875 kb on + strandat 87.902 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 15 MOI
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86,282 - GFF366 0.84 +0.7
86,488 - -2.0
86,546 + GFF367 0.11 +0.2
86,598 - GFF367 0.19 -0.6
86,825 - GFF367 0.54 -0.1
86,868 - GFF367 0.61 +2.3
86,894 + GFF367 0.65 -0.1
86,997 + GFF367 0.81 -0.1
87,005 + GFF367 0.82 +0.3
87,006 - GFF367 0.82 +0.6
87,006 - GFF367 0.82 +1.0
87,006 - GFF367 0.82 -0.2
87,006 - GFF367 0.82 -0.7
87,006 - GFF367 0.82 +0.2
87,151 - -0.2
87,151 - -0.2
87,290 - GFF368 0.16 +0.2
87,343 - GFF368 0.24 -1.1
87,375 - GFF368 0.30 -0.9
87,844 - +0.1
87,875 + +0.1
87,875 + -0.2
87,902 + +2.6

Or see this region's nucleotide sequence