Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF352

Experiment: LB_plus_SM_buffer with Ffm_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF351 and GFF352 overlap by 36 nucleotidesGFF352 and GFF353 are separated by 89 nucleotides GFF351 - Xanthine permease, at 70,435 to 71,826 GFF351 GFF352 - FIG01048298: hypothetical protein, at 71,791 to 71,964 GFF352 GFF353 - Sodium/glutamate symport protein, at 72,054 to 73,259 GFF353 Position (kb) 71 72Strain fitness (log2 ratio) -2 -1 0 1 2at 70.846 kb on - strand, within GFF351at 70.849 kb on - strand, within GFF351at 70.914 kb on - strand, within GFF351at 70.987 kb on - strand, within GFF351at 71.045 kb on + strand, within GFF351at 71.045 kb on + strand, within GFF351at 71.046 kb on - strand, within GFF351at 71.179 kb on - strand, within GFF351at 71.511 kb on + strand, within GFF351at 71.533 kb on + strand, within GFF351at 71.677 kb on + strand, within GFF351at 71.762 kb on - strandat 71.862 kb on - strand, within GFF352at 72.040 kb on + strandat 72.041 kb on - strandat 72.041 kb on - strandat 72.052 kb on - strandat 72.152 kb on + strandat 72.182 kb on - strand, within GFF353at 72.182 kb on - strand, within GFF353at 72.243 kb on - strand, within GFF353at 72.364 kb on + strand, within GFF353at 72.365 kb on - strand, within GFF353at 72.450 kb on - strand, within GFF353at 72.597 kb on + strand, within GFF353at 72.703 kb on + strand, within GFF353at 72.729 kb on - strand, within GFF353at 72.764 kb on - strand, within GFF353at 72.809 kb on - strand, within GFF353at 72.809 kb on - strand, within GFF353

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 15 MOI
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70,846 - GFF351 0.30 -1.7
70,849 - GFF351 0.30 -0.4
70,914 - GFF351 0.34 -0.5
70,987 - GFF351 0.40 -0.5
71,045 + GFF351 0.44 -2.3
71,045 + GFF351 0.44 +0.1
71,046 - GFF351 0.44 -0.3
71,179 - GFF351 0.53 -0.6
71,511 + GFF351 0.77 +1.2
71,533 + GFF351 0.79 -0.1
71,677 + GFF351 0.89 +0.8
71,762 - -1.1
71,862 - GFF352 0.41 -0.9
72,040 + -0.3
72,041 - +0.5
72,041 - +0.4
72,052 - +2.3
72,152 + -0.3
72,182 - GFF353 0.11 +0.1
72,182 - GFF353 0.11 -0.0
72,243 - GFF353 0.16 +0.8
72,364 + GFF353 0.26 -0.6
72,365 - GFF353 0.26 +0.3
72,450 - GFF353 0.33 -0.0
72,597 + GFF353 0.45 -0.2
72,703 + GFF353 0.54 -0.2
72,729 - GFF353 0.56 -0.3
72,764 - GFF353 0.59 +0.2
72,809 - GFF353 0.63 +1.0
72,809 - GFF353 0.63 -0.1

Or see this region's nucleotide sequence