Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2838

Experiment: LB_plus_SM_buffer with Ffm_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2837 and GFF2838 are separated by 219 nucleotidesGFF2838 and GFF2839 are separated by 804 nucleotides GFF2837 - Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129), at 358,854 to 360,599 GFF2837 GFF2838 - Cold shock protein CspC, at 360,819 to 361,028 GFF2838 GFF2839 - FIG00638740: hypothetical protein, at 361,833 to 362,120 GFF2839 Position (kb) 360 361 362Strain fitness (log2 ratio) -1 0 1at 360.047 kb on + strand, within GFF2837at 360.304 kb on + strand, within GFF2837at 360.325 kb on - strand, within GFF2837at 360.446 kb on + strandat 360.446 kb on + strandat 360.446 kb on + strandat 360.556 kb on - strandat 360.832 kb on - strandat 360.937 kb on - strand, within GFF2838at 361.017 kb on - strandat 361.107 kb on - strandat 361.110 kb on - strandat 361.197 kb on - strandat 361.643 kb on + strandat 361.692 kb on - strandat 361.696 kb on - strandat 361.724 kb on + strandat 361.747 kb on + strandat 361.747 kb on + strandat 361.750 kb on + strandat 361.993 kb on - strand, within GFF2839

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 15 MOI
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360,047 + GFF2837 0.68 -0.4
360,304 + GFF2837 0.83 -0.3
360,325 - GFF2837 0.84 +0.3
360,446 + -0.1
360,446 + +0.5
360,446 + +0.3
360,556 - -1.4
360,832 - -0.2
360,937 - GFF2838 0.56 -0.7
361,017 - -0.1
361,107 - +0.3
361,110 - -0.7
361,197 - +0.3
361,643 + +0.2
361,692 - +0.2
361,696 - -0.1
361,724 + -0.2
361,747 + -0.0
361,747 + +0.8
361,750 + +1.0
361,993 - GFF2839 0.56 -0.1

Or see this region's nucleotide sequence