Experiment: LB_plus_SM_buffer with Ffm_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF242 and GFF243 are separated by 48 nucleotides GFF243 and GFF244 are separated by 229 nucleotides GFF244 and GFF245 are separated by 150 nucleotides GFF245 and GFF246 are separated by 43 nucleotides GFF246 and GFF247 are separated by 164 nucleotides
GFF242 - Magnesium and cobalt transport protein CorA, at 17,009 to 17,959
GFF242
GFF243 - FIG01047791: hypothetical protein, at 18,008 to 18,388
GFF243
GFF244 - hypothetical protein, at 18,618 to 18,746
GFF244
GFF245 - Protein rarD, at 18,897 to 19,781
GFF245
GFF246 - putative protein PaaI, possibly involved in aromatic compounds catabolism, at 19,825 to 20,292
GFF246
GFF247 - Phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); Outer membrane phospholipase A, at 20,457 to 21,326
GFF247
Position (kb) 18
19
20 Strain fitness (log2 ratio) -1
0
1 at 17.957 kb on + strand at 17.957 kb on + strand at 17.965 kb on + strand at 18.022 kb on + strand at 18.977 kb on + strand at 19.231 kb on - strand, within GFF245 at 19.466 kb on - strand, within GFF245 at 19.487 kb on + strand, within GFF245 at 19.488 kb on - strand, within GFF245 at 19.488 kb on - strand, within GFF245 at 19.488 kb on - strand, within GFF245 at 19.691 kb on - strand, within GFF245 at 19.805 kb on + strand at 19.806 kb on - strand at 19.836 kb on + strand at 19.836 kb on + strand at 19.838 kb on + strand at 19.838 kb on + strand at 19.838 kb on + strand at 19.839 kb on - strand at 19.862 kb on + strand at 19.862 kb on + strand at 19.883 kb on - strand, within GFF246 at 20.017 kb on + strand, within GFF246 at 20.117 kb on - strand, within GFF246 at 20.382 kb on - strand at 20.397 kb on + strand at 20.433 kb on + strand at 20.511 kb on + strand at 20.511 kb on + strand at 20.525 kb on + strand at 20.557 kb on + strand, within GFF247 at 20.584 kb on + strand, within GFF247 at 20.584 kb on + strand, within GFF247 at 20.585 kb on - strand, within GFF247 at 20.597 kb on + strand, within GFF247 at 20.606 kb on + strand, within GFF247 at 20.614 kb on - strand, within GFF247 at 20.619 kb on + strand, within GFF247 at 20.631 kb on + strand, within GFF247 at 20.632 kb on - strand, within GFF247 at 20.641 kb on - strand, within GFF247 at 20.674 kb on + strand, within GFF247 at 20.675 kb on - strand, within GFF247 at 20.678 kb on + strand, within GFF247 at 20.679 kb on - strand, within GFF247 at 20.705 kb on + strand, within GFF247 at 20.759 kb on - strand, within GFF247
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 15 MOI remove 17,957 + -0.1 17,957 + +0.2 17,965 + -0.1 18,022 + -0.9 18,977 + -0.3 19,231 - GFF245 0.38 +0.2 19,466 - GFF245 0.64 -0.1 19,487 + GFF245 0.67 +1.6 19,488 - GFF245 0.67 +0.0 19,488 - GFF245 0.67 +0.3 19,488 - GFF245 0.67 -0.1 19,691 - GFF245 0.90 +0.5 19,805 + -0.9 19,806 - +0.2 19,836 + -0.4 19,836 + +0.4 19,838 + -0.4 19,838 + +0.5 19,838 + +0.9 19,839 - +0.1 19,862 + +0.6 19,862 + +0.1 19,883 - GFF246 0.12 -0.4 20,017 + GFF246 0.41 -0.1 20,117 - GFF246 0.62 -1.1 20,382 - +0.0 20,397 + +0.4 20,433 + +0.6 20,511 + -0.2 20,511 + +0.6 20,525 + +0.6 20,557 + GFF247 0.11 -0.2 20,584 + GFF247 0.15 -0.1 20,584 + GFF247 0.15 -0.8 20,585 - GFF247 0.15 -0.2 20,597 + GFF247 0.16 +0.2 20,606 + GFF247 0.17 +0.0 20,614 - GFF247 0.18 +0.0 20,619 + GFF247 0.19 +0.9 20,631 + GFF247 0.20 +0.8 20,632 - GFF247 0.20 +1.0 20,641 - GFF247 0.21 -0.0 20,674 + GFF247 0.25 -0.9 20,675 - GFF247 0.25 -0.3 20,678 + GFF247 0.25 -0.1 20,679 - GFF247 0.26 +0.1 20,705 + GFF247 0.29 -0.5 20,759 - GFF247 0.35 +0.0
Or see this region's nucleotide sequence