Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2243

Experiment: LB_plus_SM_buffer with Ffm_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2241 and GFF2242 overlap by 4 nucleotidesGFF2242 and GFF2243 are separated by 44 nucleotidesGFF2243 and GFF2244 are separated by 14 nucleotidesGFF2244 and GFF2245 are separated by 14 nucleotidesGFF2245 and GFF2246 are separated by 85 nucleotides GFF2241 - Inner membrane protein YihY, formerly thought to be RNase BN, at 36,266 to 37,138 GFF2241 GFF2242 - D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1), at 37,135 to 37,572 GFF2242 GFF2243 - GNAT family acetyltransferase YiiD potentially involved in tRNA processing, at 37,617 to 38,558 GFF2243 GFF2244 - FIG074102: hypothetical protein, at 38,573 to 39,001 GFF2244 GFF2245 - Sea40, at 39,016 to 39,327 GFF2245 GFF2246 - Lipase, GDXG family, at 39,413 to 40,342 GFF2246 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1at 36.617 kb on + strand, within GFF2241at 36.618 kb on - strand, within GFF2241at 36.618 kb on - strand, within GFF2241at 36.677 kb on + strand, within GFF2241at 36.693 kb on - strand, within GFF2241at 36.804 kb on + strand, within GFF2241at 36.805 kb on - strand, within GFF2241at 36.860 kb on - strand, within GFF2241at 36.957 kb on - strand, within GFF2241at 36.958 kb on + strand, within GFF2241at 36.989 kb on + strand, within GFF2241at 37.030 kb on - strand, within GFF2241at 37.045 kb on + strand, within GFF2241at 37.045 kb on + strand, within GFF2241at 37.046 kb on - strand, within GFF2241at 37.046 kb on - strand, within GFF2241at 37.046 kb on - strand, within GFF2241at 37.046 kb on - strand, within GFF2241at 37.047 kb on + strand, within GFF2241at 37.068 kb on + strandat 37.145 kb on + strandat 37.224 kb on - strand, within GFF2242at 37.294 kb on - strand, within GFF2242at 37.332 kb on - strand, within GFF2242at 37.386 kb on + strand, within GFF2242at 37.487 kb on + strand, within GFF2242at 37.537 kb on - strandat 37.569 kb on - strandat 37.611 kb on - strandat 37.611 kb on - strandat 37.620 kb on + strandat 37.780 kb on + strand, within GFF2243at 37.801 kb on - strand, within GFF2243at 37.802 kb on + strand, within GFF2243at 37.803 kb on - strand, within GFF2243at 37.835 kb on + strand, within GFF2243at 37.835 kb on + strand, within GFF2243at 37.836 kb on - strand, within GFF2243at 37.843 kb on + strand, within GFF2243at 37.843 kb on + strand, within GFF2243at 37.844 kb on - strand, within GFF2243at 38.000 kb on + strand, within GFF2243at 38.000 kb on + strand, within GFF2243at 38.001 kb on - strand, within GFF2243at 38.003 kb on + strand, within GFF2243at 38.003 kb on + strand, within GFF2243at 38.043 kb on - strand, within GFF2243at 38.050 kb on + strand, within GFF2243at 38.346 kb on - strand, within GFF2243at 38.507 kb on - strandat 38.567 kb on - strandat 38.598 kb on - strandat 38.614 kb on + strandat 38.626 kb on + strand, within GFF2244at 38.658 kb on - strand, within GFF2244at 38.658 kb on - strand, within GFF2244at 38.847 kb on - strand, within GFF2244at 38.969 kb on - strandat 39.036 kb on - strandat 39.038 kb on + strandat 39.038 kb on + strandat 39.038 kb on + strandat 39.075 kb on + strand, within GFF2245at 39.094 kb on - strand, within GFF2245at 39.170 kb on + strand, within GFF2245at 39.195 kb on + strand, within GFF2245at 39.281 kb on + strand, within GFF2245at 39.440 kb on + strandat 39.440 kb on + strandat 39.441 kb on - strandat 39.441 kb on - strandat 39.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 15 MOI
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36,617 + GFF2241 0.40 -0.2
36,618 - GFF2241 0.40 +0.1
36,618 - GFF2241 0.40 +0.9
36,677 + GFF2241 0.47 +0.1
36,693 - GFF2241 0.49 +0.1
36,804 + GFF2241 0.62 -0.2
36,805 - GFF2241 0.62 -0.3
36,860 - GFF2241 0.68 +0.0
36,957 - GFF2241 0.79 +0.6
36,958 + GFF2241 0.79 -0.4
36,989 + GFF2241 0.83 -1.1
37,030 - GFF2241 0.88 -0.3
37,045 + GFF2241 0.89 +0.4
37,045 + GFF2241 0.89 +0.3
37,046 - GFF2241 0.89 +0.7
37,046 - GFF2241 0.89 -0.4
37,046 - GFF2241 0.89 -0.1
37,046 - GFF2241 0.89 +0.6
37,047 + GFF2241 0.89 +0.5
37,068 + +0.1
37,145 + +0.3
37,224 - GFF2242 0.20 +1.2
37,294 - GFF2242 0.36 +0.2
37,332 - GFF2242 0.45 +0.2
37,386 + GFF2242 0.57 +0.7
37,487 + GFF2242 0.80 -0.1
37,537 - -0.2
37,569 - +0.5
37,611 - -0.1
37,611 - +1.2
37,620 + -0.3
37,780 + GFF2243 0.17 -0.0
37,801 - GFF2243 0.20 +0.3
37,802 + GFF2243 0.20 +0.9
37,803 - GFF2243 0.20 +0.7
37,835 + GFF2243 0.23 -0.4
37,835 + GFF2243 0.23 +0.2
37,836 - GFF2243 0.23 +0.2
37,843 + GFF2243 0.24 +0.4
37,843 + GFF2243 0.24 +0.9
37,844 - GFF2243 0.24 +1.0
38,000 + GFF2243 0.41 -0.2
38,000 + GFF2243 0.41 -0.1
38,001 - GFF2243 0.41 -0.1
38,003 + GFF2243 0.41 -2.4
38,003 + GFF2243 0.41 -1.8
38,043 - GFF2243 0.45 +0.7
38,050 + GFF2243 0.46 +0.1
38,346 - GFF2243 0.77 +0.3
38,507 - -0.3
38,567 - +0.6
38,598 - -1.2
38,614 + +0.9
38,626 + GFF2244 0.12 +0.8
38,658 - GFF2244 0.20 +0.4
38,658 - GFF2244 0.20 -0.1
38,847 - GFF2244 0.64 -1.1
38,969 - -2.4
39,036 - +0.6
39,038 + +0.0
39,038 + +0.2
39,038 + -1.7
39,075 + GFF2245 0.19 +1.0
39,094 - GFF2245 0.25 -0.2
39,170 + GFF2245 0.49 -0.2
39,195 + GFF2245 0.57 -1.2
39,281 + GFF2245 0.85 +0.4
39,440 + +0.5
39,440 + -1.2
39,441 - +0.0
39,441 - +0.5
39,441 - +0.1

Or see this region's nucleotide sequence