Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF201

Experiment: LB_plus_SM_buffer with Ffm_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF200 and GFF201 are separated by 80 nucleotidesGFF201 and GFF202 overlap by 4 nucleotides GFF200 - Putative metabolite transport protein yaaU, at 195,572 to 196,978 GFF200 GFF201 - Ferredoxin-like protein FixX, at 197,059 to 197,346 GFF201 GFF202 - Probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-), at 197,343 to 198,629 GFF202 Position (kb) 197 198Strain fitness (log2 ratio) -1 0 1at 196.124 kb on - strand, within GFF200at 196.125 kb on + strand, within GFF200at 196.126 kb on - strand, within GFF200at 196.543 kb on - strand, within GFF200at 196.556 kb on - strand, within GFF200at 196.883 kb on - strandat 197.057 kb on + strandat 197.204 kb on + strand, within GFF201at 197.349 kb on + strandat 197.708 kb on + strand, within GFF202at 197.740 kb on - strand, within GFF202at 197.769 kb on - strand, within GFF202at 197.769 kb on - strand, within GFF202at 197.769 kb on - strand, within GFF202at 197.804 kb on - strand, within GFF202at 198.024 kb on + strand, within GFF202at 198.312 kb on + strand, within GFF202at 198.313 kb on - strand, within GFF202

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 15 MOI
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196,124 - GFF200 0.39 -0.2
196,125 + GFF200 0.39 +0.8
196,126 - GFF200 0.39 -0.1
196,543 - GFF200 0.69 +1.0
196,556 - GFF200 0.70 +0.2
196,883 - -0.4
197,057 + +0.0
197,204 + GFF201 0.50 -0.4
197,349 + +0.2
197,708 + GFF202 0.28 +0.1
197,740 - GFF202 0.31 -0.3
197,769 - GFF202 0.33 -0.2
197,769 - GFF202 0.33 +0.3
197,769 - GFF202 0.33 -0.2
197,804 - GFF202 0.36 +0.2
198,024 + GFF202 0.53 -1.3
198,312 + GFF202 0.75 -0.4
198,313 - GFF202 0.75 -0.1

Or see this region's nucleotide sequence