Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1610

Experiment: LB_plus_SM_buffer with Ffm_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1610 and GFF1611 are separated by 434 nucleotidesGFF1611 and GFF1612 are separated by 54 nucleotides GFF1610 - hypothetical protein, at 346 to 498 GFF1610 GFF1611 - Phage protein, at 933 to 1,196 GFF1611 GFF1612 - FIG01046582: hypothetical protein, at 1,251 to 1,439 GFF1612 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1at 0.226 kb on - strandat 0.347 kb on + strandat 0.417 kb on - strand, within GFF1610at 0.572 kb on - strandat 0.931 kb on + strandat 0.935 kb on - strandat 1.061 kb on - strand, within GFF1611at 1.398 kb on - strand, within GFF1612

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 15 MOI
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226 - +0.1
347 + +0.7
417 - GFF1610 0.46 -0.5
572 - -0.1
931 + +0.0
935 - -0.5
1,061 - GFF1611 0.48 +0.8
1,398 - GFF1612 0.78 -0.4

Or see this region's nucleotide sequence