Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1435

Experiment: LB_plus_SM_buffer with Ffm_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1434 and GFF1435 are separated by 382 nucleotidesGFF1435 and GFF1436 are separated by 23 nucleotides GFF1434 - FIG00732228: membrane protein, at 78,617 to 80,005 GFF1434 GFF1435 - Agglutination protein, at 80,388 to 81,314 GFF1435 GFF1436 - Putative type-I secretion protein, at 81,338 to 82,588 GFF1436 Position (kb) 80 81 82Strain fitness (log2 ratio) -1 0 1at 79.913 kb on - strandat 80.128 kb on - strandat 80.438 kb on - strandat 81.189 kb on + strand, within GFF1435

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 15 MOI
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79,913 - +1.2
80,128 - +0.3
80,438 - +0.6
81,189 + GFF1435 0.86 -0.5

Or see this region's nucleotide sequence