Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1343

Experiment: LB_plus_SM_buffer with Ffm_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1342 and GFF1343 are separated by 46 nucleotidesGFF1343 and GFF1344 are separated by 44 nucleotides GFF1342 - FIG00638667: hypothetical protein, at 51,231 to 51,863 GFF1342 GFF1343 - Attachment invasion locus protein precursor, at 51,910 to 52,446 GFF1343 GFF1344 - FIG01046078: hypothetical protein, at 52,491 to 52,676 GFF1344 Position (kb) 51 52 53Strain fitness (log2 ratio) -1 0 1at 51.092 kb on - strandat 51.177 kb on + strandat 51.191 kb on - strandat 51.210 kb on + strandat 51.298 kb on - strand, within GFF1342at 51.570 kb on - strand, within GFF1342at 51.764 kb on + strand, within GFF1342at 51.779 kb on + strand, within GFF1342at 51.848 kb on + strandat 51.885 kb on - strandat 51.949 kb on - strandat 52.283 kb on + strand, within GFF1343at 52.744 kb on + strandat 52.873 kb on - strandat 52.881 kb on + strandat 53.020 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 15 MOI
remove
51,092 - -0.2
51,177 + -0.2
51,191 - +0.1
51,210 + -0.1
51,298 - GFF1342 0.11 -0.2
51,570 - GFF1342 0.54 -0.0
51,764 + GFF1342 0.84 +0.7
51,779 + GFF1342 0.87 +0.6
51,848 + -0.4
51,885 - +0.3
51,949 - +0.1
52,283 + GFF1343 0.69 -0.6
52,744 + +0.1
52,873 - +0.3
52,881 + +0.2
53,020 - -0.8

Or see this region's nucleotide sequence