Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_783 and PfGW456L13_784 are separated by 268 nucleotides PfGW456L13_784 and PfGW456L13_785 are separated by 28 nucleotides PfGW456L13_785 and PfGW456L13_786 are separated by 393 nucleotides
PfGW456L13_783 - Protein YicC, at 887,026 to 887,889
_783
PfGW456L13_784 - Ribonuclease PH (EC 2.7.7.56), at 888,158 to 888,880
_784
PfGW456L13_785 - FIG00955116: hypothetical protein, at 888,909 to 889,277
_785
PfGW456L13_786 - Sodium/glutamate symport protein, at 889,671 to 890,879
_786
Position (kb) 888
889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 887.674 kb on - strand, within PfGW456L13_783 at 887.719 kb on + strand, within PfGW456L13_783 at 887.719 kb on + strand, within PfGW456L13_783 at 887.720 kb on - strand, within PfGW456L13_783 at 887.720 kb on - strand, within PfGW456L13_783 at 887.895 kb on + strand at 887.896 kb on - strand at 887.953 kb on + strand at 887.954 kb on - strand at 888.115 kb on + strand at 888.115 kb on + strand at 888.115 kb on + strand at 888.115 kb on + strand at 888.115 kb on + strand at 888.115 kb on + strand at 888.115 kb on + strand at 888.115 kb on + strand at 888.115 kb on + strand at 888.116 kb on - strand at 888.116 kb on - strand at 888.116 kb on - strand at 888.116 kb on - strand at 888.117 kb on + strand at 888.118 kb on - strand at 888.145 kb on - strand at 888.150 kb on + strand at 888.150 kb on + strand at 888.151 kb on - strand at 888.151 kb on - strand at 888.151 kb on - strand at 888.151 kb on - strand at 888.151 kb on - strand at 888.157 kb on + strand at 888.158 kb on - strand at 888.162 kb on + strand at 888.162 kb on + strand at 888.162 kb on + strand at 888.162 kb on + strand at 888.162 kb on + strand at 888.162 kb on + strand at 888.162 kb on + strand at 888.162 kb on + strand at 888.162 kb on + strand at 888.162 kb on + strand at 888.162 kb on + strand at 888.162 kb on + strand at 888.162 kb on + strand at 888.163 kb on - strand at 888.163 kb on - strand at 888.163 kb on - strand at 888.163 kb on - strand at 888.163 kb on - strand at 888.163 kb on - strand at 888.163 kb on - strand at 888.163 kb on - strand at 888.163 kb on - strand at 888.163 kb on - strand at 888.163 kb on - strand at 888.218 kb on + strand at 888.218 kb on + strand at 888.218 kb on + strand at 888.219 kb on - strand at 888.219 kb on - strand at 888.219 kb on - strand at 888.219 kb on - strand at 888.219 kb on - strand at 888.219 kb on - strand at 888.300 kb on + strand, within PfGW456L13_784 at 888.347 kb on + strand, within PfGW456L13_784 at 888.348 kb on - strand, within PfGW456L13_784 at 888.380 kb on - strand, within PfGW456L13_784 at 888.497 kb on + strand, within PfGW456L13_784 at 888.497 kb on + strand, within PfGW456L13_784 at 888.497 kb on + strand, within PfGW456L13_784 at 888.497 kb on + strand, within PfGW456L13_784 at 888.497 kb on + strand, within PfGW456L13_784 at 888.498 kb on - strand, within PfGW456L13_784 at 888.498 kb on - strand, within PfGW456L13_784 at 888.498 kb on - strand, within PfGW456L13_784 at 888.498 kb on - strand, within PfGW456L13_784 at 888.498 kb on - strand, within PfGW456L13_784 at 888.662 kb on + strand, within PfGW456L13_784 at 888.662 kb on + strand, within PfGW456L13_784 at 888.662 kb on + strand, within PfGW456L13_784 at 888.662 kb on + strand, within PfGW456L13_784 at 888.662 kb on + strand, within PfGW456L13_784 at 888.662 kb on + strand, within PfGW456L13_784 at 888.662 kb on + strand, within PfGW456L13_784 at 888.662 kb on + strand, within PfGW456L13_784 at 888.662 kb on + strand, within PfGW456L13_784 at 888.662 kb on + strand, within PfGW456L13_784 at 888.662 kb on + strand, within PfGW456L13_784 at 888.662 kb on + strand, within PfGW456L13_784 at 888.662 kb on + strand, within PfGW456L13_784 at 888.663 kb on - strand, within PfGW456L13_784 at 888.663 kb on - strand, within PfGW456L13_784 at 888.663 kb on - strand, within PfGW456L13_784 at 888.663 kb on - strand, within PfGW456L13_784 at 888.663 kb on - strand, within PfGW456L13_784 at 888.663 kb on - strand, within PfGW456L13_784 at 888.663 kb on - strand, within PfGW456L13_784 at 888.693 kb on - strand, within PfGW456L13_784 at 888.693 kb on - strand, within PfGW456L13_784 at 888.732 kb on + strand, within PfGW456L13_784 at 888.908 kb on + strand at 888.908 kb on + strand at 888.908 kb on + strand at 888.908 kb on + strand at 888.908 kb on + strand at 888.909 kb on - strand at 888.909 kb on - strand at 888.909 kb on - strand at 888.909 kb on - strand at 888.909 kb on - strand at 888.909 kb on - strand at 888.909 kb on - strand at 888.909 kb on - strand at 888.909 kb on - strand at 888.909 kb on - strand at 889.275 kb on + strand at 889.275 kb on + strand at 889.276 kb on - strand at 889.276 kb on - strand at 889.371 kb on - strand at 889.433 kb on - strand at 889.448 kb on - strand at 889.448 kb on - strand at 889.448 kb on - strand at 889.479 kb on + strand at 889.479 kb on + strand at 889.479 kb on + strand at 889.480 kb on - strand at 889.480 kb on - strand at 889.480 kb on - strand at 889.508 kb on + strand at 889.509 kb on - strand at 889.524 kb on - strand at 889.526 kb on + strand at 889.541 kb on - strand at 889.578 kb on + strand at 889.578 kb on + strand at 889.578 kb on + strand at 889.579 kb on - strand at 889.579 kb on - strand at 889.649 kb on + strand at 889.651 kb on + strand at 889.651 kb on + strand at 889.653 kb on + strand at 889.653 kb on + strand at 889.654 kb on - strand at 889.654 kb on - strand at 889.700 kb on - strand at 889.702 kb on + strand at 889.718 kb on - strand at 889.767 kb on + strand at 889.768 kb on - strand at 889.768 kb on - strand at 889.768 kb on - strand at 889.768 kb on - strand at 889.772 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 887,674 - PfGW456L13_783 0.75 -0.8 887,719 + PfGW456L13_783 0.80 -1.3 887,719 + PfGW456L13_783 0.80 +0.2 887,720 - PfGW456L13_783 0.80 -0.0 887,720 - PfGW456L13_783 0.80 -1.2 887,895 + -0.6 887,896 - -1.3 887,953 + +1.0 887,954 - +0.9 888,115 + +0.8 888,115 + +0.0 888,115 + +0.3 888,115 + -0.8 888,115 + -0.5 888,115 + -0.3 888,115 + +0.2 888,115 + +0.4 888,115 + +0.5 888,116 - +1.3 888,116 - +0.5 888,116 - -0.2 888,116 - +2.0 888,117 + -0.8 888,118 - -0.4 888,145 - +0.5 888,150 + -0.2 888,150 + +0.7 888,151 - -0.4 888,151 - -0.5 888,151 - -1.1 888,151 - -0.5 888,151 - -0.8 888,157 + -1.1 888,158 - -1.3 888,162 + +0.1 888,162 + -0.2 888,162 + +0.4 888,162 + -0.4 888,162 + +0.2 888,162 + +0.6 888,162 + -0.4 888,162 + -2.1 888,162 + +0.4 888,162 + -0.9 888,162 + +0.3 888,162 + -1.4 888,162 + -0.9 888,163 - -0.5 888,163 - -1.5 888,163 - -0.7 888,163 - +0.7 888,163 - +0.3 888,163 - -0.7 888,163 - -1.2 888,163 - -3.2 888,163 - -3.0 888,163 - -0.9 888,163 - +0.4 888,218 + -1.1 888,218 + +0.8 888,218 + -1.1 888,219 - -2.8 888,219 - -1.2 888,219 - -1.2 888,219 - -2.5 888,219 - -0.7 888,219 - -0.8 888,300 + PfGW456L13_784 0.20 +0.2 888,347 + PfGW456L13_784 0.26 -1.3 888,348 - PfGW456L13_784 0.26 -0.7 888,380 - PfGW456L13_784 0.31 +0.1 888,497 + PfGW456L13_784 0.47 -0.8 888,497 + PfGW456L13_784 0.47 -1.4 888,497 + PfGW456L13_784 0.47 -0.5 888,497 + PfGW456L13_784 0.47 +1.0 888,497 + PfGW456L13_784 0.47 -0.5 888,498 - PfGW456L13_784 0.47 -0.3 888,498 - PfGW456L13_784 0.47 +0.2 888,498 - PfGW456L13_784 0.47 -2.0 888,498 - PfGW456L13_784 0.47 -0.4 888,498 - PfGW456L13_784 0.47 -1.5 888,662 + PfGW456L13_784 0.70 +0.0 888,662 + PfGW456L13_784 0.70 -0.5 888,662 + PfGW456L13_784 0.70 +0.5 888,662 + PfGW456L13_784 0.70 -1.9 888,662 + PfGW456L13_784 0.70 +0.0 888,662 + PfGW456L13_784 0.70 -2.0 888,662 + PfGW456L13_784 0.70 +0.0 888,662 + PfGW456L13_784 0.70 -1.6 888,662 + PfGW456L13_784 0.70 -0.8 888,662 + PfGW456L13_784 0.70 -0.1 888,662 + PfGW456L13_784 0.70 -0.8 888,662 + PfGW456L13_784 0.70 -0.2 888,662 + PfGW456L13_784 0.70 +0.2 888,663 - PfGW456L13_784 0.70 -0.2 888,663 - PfGW456L13_784 0.70 -1.0 888,663 - PfGW456L13_784 0.70 -0.3 888,663 - PfGW456L13_784 0.70 -2.7 888,663 - PfGW456L13_784 0.70 +0.0 888,663 - PfGW456L13_784 0.70 -1.9 888,663 - PfGW456L13_784 0.70 -0.8 888,693 - PfGW456L13_784 0.74 -2.0 888,693 - PfGW456L13_784 0.74 -0.9 888,732 + PfGW456L13_784 0.79 -0.2 888,908 + -1.1 888,908 + -0.5 888,908 + -1.0 888,908 + -0.9 888,908 + -0.9 888,909 - -0.6 888,909 - -0.3 888,909 - -0.2 888,909 - -0.6 888,909 - -0.7 888,909 - -0.8 888,909 - -0.5 888,909 - -0.3 888,909 - -0.9 888,909 - -0.6 889,275 + +0.2 889,275 + +0.5 889,276 - -1.6 889,276 - +0.3 889,371 - +0.6 889,433 - +0.4 889,448 - +0.6 889,448 - -1.2 889,448 - +0.3 889,479 + +0.3 889,479 + +0.7 889,479 + -0.1 889,480 - +0.0 889,480 - -1.3 889,480 - -1.5 889,508 + -0.3 889,509 - -0.2 889,524 - -0.5 889,526 + +1.7 889,541 - -0.1 889,578 + +0.8 889,578 + -1.1 889,578 + +0.9 889,579 - -1.0 889,579 - -0.0 889,649 + -0.9 889,651 + +0.8 889,651 + +0.0 889,653 + +0.0 889,653 + +0.4 889,654 - +0.0 889,654 - -0.9 889,700 - +0.2 889,702 + +1.6 889,718 - +0.4 889,767 + +0.8 889,768 - +0.7 889,768 - -0.7 889,768 - -0.9 889,768 - +1.1 889,772 + +1.0
Or see this region's nucleotide sequence