Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_725 and PfGW456L13_726 are separated by 200 nucleotides PfGW456L13_726 and PfGW456L13_727 are separated by 377 nucleotides
PfGW456L13_725 - Sensory box/GGDEF family protein, at 821,629 to 824,499
_725
PfGW456L13_726 - Phosphogluconate repressor HexR, RpiR family, at 824,700 to 825,566
_726
PfGW456L13_727 - LysR family transcriptional regulator PA5437, at 825,944 to 826,891
_727
Position (kb) 824
825
826 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 823.730 kb on + strand, within PfGW456L13_725 at 823.731 kb on - strand, within PfGW456L13_725 at 823.731 kb on - strand, within PfGW456L13_725 at 823.731 kb on - strand, within PfGW456L13_725 at 823.786 kb on + strand, within PfGW456L13_725 at 823.787 kb on - strand, within PfGW456L13_725 at 823.787 kb on - strand, within PfGW456L13_725 at 823.787 kb on - strand, within PfGW456L13_725 at 823.787 kb on - strand, within PfGW456L13_725 at 824.212 kb on + strand, within PfGW456L13_725 at 824.212 kb on + strand, within PfGW456L13_725 at 824.212 kb on + strand, within PfGW456L13_725 at 824.212 kb on + strand, within PfGW456L13_725 at 824.213 kb on - strand at 824.227 kb on + strand at 824.227 kb on + strand at 824.227 kb on + strand at 824.228 kb on - strand at 824.228 kb on - strand at 824.228 kb on - strand at 824.228 kb on - strand at 824.228 kb on - strand at 824.228 kb on - strand at 824.228 kb on - strand at 824.251 kb on + strand at 824.251 kb on + strand at 824.251 kb on + strand at 824.251 kb on + strand at 824.251 kb on + strand at 824.251 kb on + strand at 824.252 kb on - strand at 824.252 kb on - strand at 824.275 kb on - strand at 824.313 kb on + strand at 824.352 kb on + strand at 824.352 kb on + strand at 824.352 kb on + strand at 824.353 kb on - strand at 824.423 kb on + strand at 824.423 kb on + strand at 824.423 kb on + strand at 824.423 kb on + strand at 824.423 kb on + strand at 824.423 kb on + strand at 824.424 kb on - strand at 824.424 kb on - strand at 824.424 kb on - strand at 824.431 kb on + strand at 824.431 kb on + strand at 824.431 kb on + strand at 824.431 kb on + strand at 824.432 kb on - strand at 824.506 kb on + strand at 824.506 kb on + strand at 824.506 kb on + strand at 824.507 kb on - strand at 824.507 kb on - strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.510 kb on + strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.511 kb on - strand at 824.514 kb on + strand at 824.514 kb on + strand at 824.514 kb on + strand at 824.515 kb on - strand at 824.515 kb on - strand at 824.515 kb on - strand at 824.515 kb on - strand at 824.515 kb on - strand at 824.570 kb on + strand at 824.570 kb on + strand at 824.570 kb on + strand at 824.570 kb on + strand at 824.570 kb on + strand at 824.571 kb on - strand at 824.571 kb on - strand at 824.571 kb on - strand at 824.571 kb on - strand at 824.640 kb on + strand at 824.643 kb on + strand at 824.645 kb on + strand at 824.646 kb on - strand at 824.646 kb on - strand at 824.646 kb on - strand at 824.649 kb on + strand at 824.650 kb on - strand at 824.650 kb on - strand at 824.660 kb on + strand at 824.660 kb on + strand at 824.660 kb on + strand at 824.660 kb on + strand at 824.660 kb on + strand at 824.661 kb on - strand at 824.661 kb on - strand at 824.661 kb on - strand at 824.661 kb on - strand at 824.661 kb on - strand at 824.681 kb on + strand at 824.681 kb on + strand at 824.681 kb on + strand at 824.979 kb on + strand, within PfGW456L13_726 at 824.979 kb on + strand, within PfGW456L13_726 at 824.980 kb on - strand, within PfGW456L13_726 at 825.011 kb on + strand, within PfGW456L13_726 at 825.011 kb on + strand, within PfGW456L13_726 at 825.011 kb on + strand, within PfGW456L13_726 at 825.011 kb on + strand, within PfGW456L13_726 at 825.011 kb on + strand, within PfGW456L13_726 at 825.011 kb on + strand, within PfGW456L13_726 at 825.012 kb on - strand, within PfGW456L13_726 at 825.012 kb on - strand, within PfGW456L13_726 at 825.012 kb on - strand, within PfGW456L13_726 at 825.012 kb on - strand, within PfGW456L13_726 at 825.099 kb on + strand, within PfGW456L13_726 at 825.099 kb on + strand, within PfGW456L13_726 at 825.100 kb on - strand, within PfGW456L13_726 at 825.100 kb on - strand, within PfGW456L13_726 at 825.100 kb on - strand, within PfGW456L13_726 at 825.160 kb on + strand, within PfGW456L13_726 at 825.161 kb on - strand, within PfGW456L13_726 at 825.161 kb on - strand, within PfGW456L13_726 at 825.178 kb on - strand, within PfGW456L13_726 at 825.178 kb on - strand, within PfGW456L13_726 at 825.399 kb on + strand, within PfGW456L13_726 at 825.399 kb on + strand, within PfGW456L13_726 at 825.399 kb on + strand, within PfGW456L13_726 at 825.635 kb on + strand at 825.635 kb on + strand at 825.636 kb on - strand at 825.685 kb on + strand at 825.685 kb on + strand at 825.685 kb on + strand at 825.685 kb on + strand at 826.196 kb on + strand, within PfGW456L13_727 at 826.196 kb on + strand, within PfGW456L13_727 at 826.196 kb on + strand, within PfGW456L13_727 at 826.197 kb on - strand, within PfGW456L13_727 at 826.197 kb on - strand, within PfGW456L13_727 at 826.197 kb on - strand, within PfGW456L13_727 at 826.269 kb on + strand, within PfGW456L13_727 at 826.269 kb on + strand, within PfGW456L13_727 at 826.269 kb on + strand, within PfGW456L13_727 at 826.269 kb on + strand, within PfGW456L13_727 at 826.269 kb on + strand, within PfGW456L13_727 at 826.270 kb on - strand, within PfGW456L13_727 at 826.323 kb on + strand, within PfGW456L13_727 at 826.324 kb on - strand, within PfGW456L13_727 at 826.324 kb on - strand, within PfGW456L13_727 at 826.324 kb on - strand, within PfGW456L13_727
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 823,730 + PfGW456L13_725 0.73 -0.5 823,731 - PfGW456L13_725 0.73 +0.1 823,731 - PfGW456L13_725 0.73 -0.7 823,731 - PfGW456L13_725 0.73 +0.9 823,786 + PfGW456L13_725 0.75 -1.0 823,787 - PfGW456L13_725 0.75 -0.0 823,787 - PfGW456L13_725 0.75 +0.5 823,787 - PfGW456L13_725 0.75 +1.2 823,787 - PfGW456L13_725 0.75 +0.1 824,212 + PfGW456L13_725 0.90 +0.2 824,212 + PfGW456L13_725 0.90 -0.7 824,212 + PfGW456L13_725 0.90 -2.0 824,212 + PfGW456L13_725 0.90 -0.8 824,213 - +0.1 824,227 + -1.0 824,227 + +0.4 824,227 + -1.5 824,228 - +0.2 824,228 - -0.4 824,228 - -0.3 824,228 - -0.5 824,228 - -0.3 824,228 - -2.1 824,228 - +0.1 824,251 + +1.1 824,251 + +0.1 824,251 + -0.0 824,251 + +0.4 824,251 + +0.3 824,251 + -1.0 824,252 - +0.2 824,252 - -2.4 824,275 - +0.4 824,313 + -0.1 824,352 + -0.2 824,352 + -1.6 824,352 + +0.9 824,353 - +0.1 824,423 + -0.2 824,423 + -0.1 824,423 + -0.3 824,423 + +0.5 824,423 + +0.8 824,423 + +0.7 824,424 - +2.0 824,424 - -0.1 824,424 - -0.6 824,431 + +0.7 824,431 + +0.4 824,431 + -1.1 824,431 + -1.1 824,432 - +1.4 824,506 + +0.5 824,506 + -0.6 824,506 + +0.4 824,507 - +0.6 824,507 - -0.3 824,510 + -0.9 824,510 + +0.6 824,510 + +0.4 824,510 + +1.4 824,510 + -0.7 824,510 + -0.4 824,510 + -0.1 824,510 + -0.2 824,510 + -0.3 824,510 + +0.7 824,510 + -1.3 824,510 + +0.4 824,510 + -0.0 824,510 + -0.5 824,510 + -0.6 824,510 + -0.1 824,510 + +0.3 824,510 + -0.8 824,510 + -2.6 824,511 - +0.6 824,511 - +1.1 824,511 - -1.1 824,511 - -1.4 824,511 - -1.1 824,511 - -0.5 824,511 - -0.6 824,511 - -0.5 824,511 - +0.2 824,511 - -0.0 824,511 - +0.1 824,511 - +0.3 824,511 - +0.2 824,511 - -0.0 824,511 - -0.4 824,511 - -0.0 824,511 - +0.0 824,511 - -0.6 824,511 - -1.5 824,511 - -1.1 824,511 - -0.4 824,511 - +0.4 824,511 - -0.6 824,514 + +0.1 824,514 + +0.9 824,514 + -0.0 824,515 - +1.5 824,515 - +0.3 824,515 - +0.0 824,515 - +0.9 824,515 - -0.1 824,570 + +1.4 824,570 + +1.0 824,570 + -0.8 824,570 + +0.5 824,570 + +0.2 824,571 - -1.6 824,571 - -0.5 824,571 - +0.3 824,571 - -0.2 824,640 + -1.7 824,643 + -0.0 824,645 + +0.7 824,646 - -2.2 824,646 - -1.5 824,646 - -0.9 824,649 + -0.0 824,650 - -2.6 824,650 - -0.5 824,660 + -0.3 824,660 + -0.4 824,660 + -0.7 824,660 + +0.1 824,660 + +0.5 824,661 - -2.5 824,661 - -2.1 824,661 - -0.6 824,661 - -0.8 824,661 - +0.4 824,681 + -1.3 824,681 + -0.7 824,681 + -0.6 824,979 + PfGW456L13_726 0.32 -2.5 824,979 + PfGW456L13_726 0.32 -0.1 824,980 - PfGW456L13_726 0.32 -1.0 825,011 + PfGW456L13_726 0.36 -1.1 825,011 + PfGW456L13_726 0.36 -3.1 825,011 + PfGW456L13_726 0.36 -2.7 825,011 + PfGW456L13_726 0.36 -4.3 825,011 + PfGW456L13_726 0.36 -3.0 825,011 + PfGW456L13_726 0.36 -3.2 825,012 - PfGW456L13_726 0.36 -1.5 825,012 - PfGW456L13_726 0.36 -0.9 825,012 - PfGW456L13_726 0.36 -1.2 825,012 - PfGW456L13_726 0.36 -1.5 825,099 + PfGW456L13_726 0.46 -3.0 825,099 + PfGW456L13_726 0.46 -1.9 825,100 - PfGW456L13_726 0.46 -1.7 825,100 - PfGW456L13_726 0.46 -3.3 825,100 - PfGW456L13_726 0.46 -3.3 825,160 + PfGW456L13_726 0.53 -1.8 825,161 - PfGW456L13_726 0.53 -2.0 825,161 - PfGW456L13_726 0.53 -3.2 825,178 - PfGW456L13_726 0.55 -1.8 825,178 - PfGW456L13_726 0.55 -2.4 825,399 + PfGW456L13_726 0.81 -1.0 825,399 + PfGW456L13_726 0.81 -0.2 825,399 + PfGW456L13_726 0.81 -1.3 825,635 + -2.0 825,635 + -0.7 825,636 - -0.9 825,685 + +0.0 825,685 + -0.4 825,685 + -1.0 825,685 + +1.1 826,196 + PfGW456L13_727 0.27 -3.5 826,196 + PfGW456L13_727 0.27 -2.8 826,196 + PfGW456L13_727 0.27 -4.3 826,197 - PfGW456L13_727 0.27 -2.8 826,197 - PfGW456L13_727 0.27 -4.9 826,197 - PfGW456L13_727 0.27 -2.4 826,269 + PfGW456L13_727 0.34 -3.5 826,269 + PfGW456L13_727 0.34 -2.7 826,269 + PfGW456L13_727 0.34 -0.3 826,269 + PfGW456L13_727 0.34 -2.2 826,269 + PfGW456L13_727 0.34 +0.8 826,270 - PfGW456L13_727 0.34 -4.3 826,323 + PfGW456L13_727 0.40 -2.8 826,324 - PfGW456L13_727 0.40 -3.3 826,324 - PfGW456L13_727 0.40 -3.8 826,324 - PfGW456L13_727 0.40 -2.7
Or see this region's nucleotide sequence