Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_68 and PfGW456L13_69 are separated by 501 nucleotides PfGW456L13_69 and PfGW456L13_70 overlap by 8 nucleotides
PfGW456L13_68 - hypothetical protein, at 79,906 to 80,049
_68
PfGW456L13_69 - Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-), at 80,551 to 81,399
_69
PfGW456L13_70 - Cobalt-precorrin-6 synthase, anaerobic, at 81,392 to 82,489
_70
Position (kb) 80
81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 79.573 kb on + strand at 79.573 kb on + strand at 79.573 kb on + strand at 79.573 kb on + strand at 79.573 kb on + strand at 79.573 kb on + strand at 79.573 kb on + strand at 79.574 kb on - strand at 79.717 kb on - strand at 79.717 kb on - strand at 79.717 kb on - strand at 79.762 kb on + strand at 79.805 kb on + strand at 79.950 kb on + strand, within PfGW456L13_68 at 79.967 kb on + strand, within PfGW456L13_68 at 80.073 kb on - strand at 80.113 kb on - strand at 80.173 kb on + strand at 80.174 kb on - strand at 80.211 kb on - strand at 80.211 kb on - strand at 80.459 kb on + strand at 80.459 kb on + strand at 80.459 kb on + strand at 80.460 kb on - strand at 80.478 kb on + strand at 80.478 kb on + strand at 80.478 kb on + strand at 80.478 kb on + strand at 80.478 kb on + strand at 80.479 kb on - strand at 80.625 kb on + strand at 81.187 kb on - strand, within PfGW456L13_69 at 81.363 kb on + strand at 81.363 kb on + strand at 81.364 kb on - strand at 81.364 kb on - strand at 81.651 kb on - strand, within PfGW456L13_70 at 81.651 kb on - strand, within PfGW456L13_70 at 81.821 kb on + strand, within PfGW456L13_70 at 81.821 kb on + strand at 81.821 kb on + strand, within PfGW456L13_70 at 81.821 kb on + strand, within PfGW456L13_70 at 81.821 kb on + strand, within PfGW456L13_70 at 81.822 kb on - strand, within PfGW456L13_70 at 81.822 kb on - strand, within PfGW456L13_70 at 81.965 kb on + strand, within PfGW456L13_70 at 81.966 kb on - strand, within PfGW456L13_70 at 82.070 kb on + strand, within PfGW456L13_70 at 82.070 kb on + strand, within PfGW456L13_70 at 82.071 kb on - strand, within PfGW456L13_70 at 82.071 kb on - strand, within PfGW456L13_70 at 82.143 kb on + strand, within PfGW456L13_70 at 82.143 kb on + strand, within PfGW456L13_70 at 82.144 kb on - strand, within PfGW456L13_70 at 82.144 kb on - strand, within PfGW456L13_70 at 82.144 kb on - strand, within PfGW456L13_70 at 82.144 kb on - strand, within PfGW456L13_70 at 82.153 kb on + strand, within PfGW456L13_70 at 82.153 kb on + strand, within PfGW456L13_70 at 82.153 kb on + strand, within PfGW456L13_70 at 82.257 kb on + strand, within PfGW456L13_70
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 79,573 + +0.3 79,573 + -0.3 79,573 + +0.3 79,573 + +0.8 79,573 + +0.6 79,573 + +0.5 79,573 + +1.2 79,574 - +1.8 79,717 - +0.1 79,717 - -0.5 79,717 - -0.8 79,762 + +1.2 79,805 + -0.6 79,950 + PfGW456L13_68 0.31 -0.4 79,967 + PfGW456L13_68 0.42 -0.7 80,073 - +1.7 80,113 - +0.8 80,173 + -2.3 80,174 - -1.5 80,211 - -0.2 80,211 - -2.9 80,459 + -0.1 80,459 + -1.5 80,459 + -0.7 80,460 - -1.3 80,478 + +0.4 80,478 + -1.3 80,478 + -1.1 80,478 + -0.2 80,478 + -2.5 80,479 - -1.7 80,625 + -1.6 81,187 - PfGW456L13_69 0.75 -1.2 81,363 + -2.2 81,363 + -1.4 81,364 - +0.4 81,364 - -0.3 81,651 - PfGW456L13_70 0.24 -1.5 81,651 - PfGW456L13_70 0.24 -1.0 81,821 + PfGW456L13_70 0.39 +0.5 81,821 + +0.8 81,821 + PfGW456L13_70 0.39 -1.3 81,821 + PfGW456L13_70 0.39 -1.5 81,821 + PfGW456L13_70 0.39 -1.8 81,822 - PfGW456L13_70 0.39 -0.4 81,822 - PfGW456L13_70 0.39 -2.2 81,965 + PfGW456L13_70 0.52 -1.4 81,966 - PfGW456L13_70 0.52 +0.1 82,070 + PfGW456L13_70 0.62 -0.6 82,070 + PfGW456L13_70 0.62 +0.9 82,071 - PfGW456L13_70 0.62 -2.4 82,071 - PfGW456L13_70 0.62 +0.7 82,143 + PfGW456L13_70 0.68 -1.7 82,143 + PfGW456L13_70 0.68 -1.3 82,144 - PfGW456L13_70 0.68 -0.2 82,144 - PfGW456L13_70 0.68 +0.1 82,144 - PfGW456L13_70 0.68 -0.7 82,144 - PfGW456L13_70 0.68 -1.0 82,153 + PfGW456L13_70 0.69 -3.6 82,153 + PfGW456L13_70 0.69 -0.3 82,153 + PfGW456L13_70 0.69 -2.4 82,257 + PfGW456L13_70 0.79 +0.1
Or see this region's nucleotide sequence