Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4088

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4087 and PfGW456L13_4088 are separated by 176 nucleotidesPfGW456L13_4088 and PfGW456L13_4089 are separated by 355 nucleotides PfGW456L13_4087 - Guanine deaminase (EC 3.5.4.3), at 4,592,791 to 4,594,095 _4087 PfGW456L13_4088 - Transcriptional regulator, GntR family, at 4,594,272 to 4,595,036 _4088 PfGW456L13_4089 - Benzoate transport protein, at 4,595,392 to 4,596,606 _4089 Position (kb) 4594 4595 4596Strain fitness (log2 ratio) -2 -1 0 1 2at 4593.307 kb on + strand, within PfGW456L13_4087at 4593.307 kb on + strand, within PfGW456L13_4087at 4593.308 kb on - strand, within PfGW456L13_4087at 4593.308 kb on - strand, within PfGW456L13_4087at 4593.308 kb on - strand, within PfGW456L13_4087at 4593.308 kb on - strand, within PfGW456L13_4087at 4593.335 kb on - strand, within PfGW456L13_4087at 4593.335 kb on - strand, within PfGW456L13_4087at 4593.388 kb on + strand, within PfGW456L13_4087at 4593.453 kb on - strand, within PfGW456L13_4087at 4593.453 kb on - strand, within PfGW456L13_4087at 4593.453 kb on - strand, within PfGW456L13_4087at 4593.475 kb on + strand, within PfGW456L13_4087at 4593.475 kb on + strand, within PfGW456L13_4087at 4593.475 kb on + strand, within PfGW456L13_4087at 4593.475 kb on + strand, within PfGW456L13_4087at 4593.475 kb on + strand, within PfGW456L13_4087at 4593.476 kb on - strand, within PfGW456L13_4087at 4593.476 kb on - strand, within PfGW456L13_4087at 4593.476 kb on - strand, within PfGW456L13_4087at 4593.476 kb on - strand, within PfGW456L13_4087at 4593.476 kb on - strand, within PfGW456L13_4087at 4593.562 kb on + strand, within PfGW456L13_4087at 4593.562 kb on + strand, within PfGW456L13_4087at 4593.562 kb on + strand, within PfGW456L13_4087at 4593.562 kb on + strand, within PfGW456L13_4087at 4593.562 kb on + strand, within PfGW456L13_4087at 4593.563 kb on - strand, within PfGW456L13_4087at 4593.572 kb on - strand, within PfGW456L13_4087at 4593.808 kb on + strand, within PfGW456L13_4087at 4593.808 kb on + strand, within PfGW456L13_4087at 4593.808 kb on + strand, within PfGW456L13_4087at 4593.809 kb on - strand, within PfGW456L13_4087at 4593.809 kb on - strand, within PfGW456L13_4087at 4593.809 kb on - strand, within PfGW456L13_4087at 4593.809 kb on - strand, within PfGW456L13_4087at 4593.860 kb on - strand, within PfGW456L13_4087at 4593.955 kb on + strand, within PfGW456L13_4087at 4593.955 kb on + strand, within PfGW456L13_4087at 4593.955 kb on + strand, within PfGW456L13_4087at 4593.955 kb on + strand, within PfGW456L13_4087at 4593.956 kb on - strand, within PfGW456L13_4087at 4594.063 kb on + strandat 4594.064 kb on - strandat 4594.064 kb on - strandat 4594.064 kb on - strandat 4594.064 kb on - strandat 4594.156 kb on + strandat 4594.156 kb on + strandat 4594.157 kb on - strandat 4594.157 kb on - strandat 4594.157 kb on - strandat 4594.157 kb on - strandat 4594.157 kb on - strandat 4594.157 kb on - strandat 4594.157 kb on - strandat 4594.157 kb on - strandat 4594.157 kb on - strandat 4594.158 kb on + strandat 4594.158 kb on + strandat 4594.158 kb on + strandat 4594.158 kb on + strandat 4594.158 kb on + strandat 4594.158 kb on + strandat 4594.158 kb on + strandat 4594.159 kb on - strandat 4594.159 kb on - strandat 4594.159 kb on - strandat 4594.159 kb on - strandat 4594.159 kb on - strandat 4594.159 kb on - strandat 4594.159 kb on - strandat 4594.159 kb on - strandat 4594.165 kb on - strandat 4594.259 kb on - strandat 4594.259 kb on - strandat 4594.259 kb on - strandat 4594.499 kb on - strand, within PfGW456L13_4088at 4594.946 kb on + strand, within PfGW456L13_4088at 4594.947 kb on - strand, within PfGW456L13_4088at 4594.947 kb on - strand, within PfGW456L13_4088at 4594.955 kb on - strand, within PfGW456L13_4088at 4595.080 kb on + strandat 4595.080 kb on + strandat 4595.081 kb on - strandat 4595.081 kb on - strandat 4595.081 kb on - strandat 4595.109 kb on - strandat 4595.161 kb on + strandat 4595.161 kb on + strandat 4595.161 kb on + strandat 4595.162 kb on - strandat 4595.162 kb on - strandat 4595.185 kb on + strandat 4595.201 kb on + strandat 4595.214 kb on - strandat 4595.240 kb on + strandat 4595.373 kb on + strandat 4595.373 kb on + strandat 4595.374 kb on - strandat 4595.374 kb on - strandat 4595.483 kb on - strandat 4595.686 kb on + strand, within PfGW456L13_4089at 4595.707 kb on + strand, within PfGW456L13_4089at 4595.707 kb on + strand, within PfGW456L13_4089at 4595.707 kb on + strand, within PfGW456L13_4089at 4595.707 kb on + strandat 4595.707 kb on + strand, within PfGW456L13_4089at 4595.707 kb on + strand, within PfGW456L13_4089at 4595.707 kb on + strand, within PfGW456L13_4089at 4595.707 kb on + strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.708 kb on - strand, within PfGW456L13_4089at 4595.709 kb on + strand, within PfGW456L13_4089at 4595.709 kb on + strand, within PfGW456L13_4089at 4595.709 kb on + strand, within PfGW456L13_4089at 4595.709 kb on + strand, within PfGW456L13_4089at 4595.710 kb on - strand, within PfGW456L13_4089at 4595.710 kb on - strand, within PfGW456L13_4089at 4595.710 kb on - strand, within PfGW456L13_4089at 4595.710 kb on - strand, within PfGW456L13_4089at 4595.710 kb on - strand, within PfGW456L13_4089at 4595.710 kb on - strand, within PfGW456L13_4089at 4595.710 kb on - strand, within PfGW456L13_4089at 4595.712 kb on + strand, within PfGW456L13_4089at 4595.712 kb on + strand, within PfGW456L13_4089at 4595.712 kb on + strand, within PfGW456L13_4089at 4595.712 kb on + strand, within PfGW456L13_4089at 4595.712 kb on + strand, within PfGW456L13_4089at 4595.712 kb on + strand, within PfGW456L13_4089at 4595.712 kb on + strand, within PfGW456L13_4089at 4595.713 kb on - strand, within PfGW456L13_4089at 4595.713 kb on - strand, within PfGW456L13_4089at 4595.713 kb on - strand, within PfGW456L13_4089at 4595.870 kb on + strand, within PfGW456L13_4089at 4595.871 kb on - strand, within PfGW456L13_4089at 4595.890 kb on + strand, within PfGW456L13_4089at 4595.890 kb on + strand, within PfGW456L13_4089at 4595.890 kb on + strand, within PfGW456L13_4089at 4595.890 kb on + strand, within PfGW456L13_4089at 4595.891 kb on - strand, within PfGW456L13_4089at 4595.921 kb on - strand, within PfGW456L13_4089at 4595.921 kb on - strand, within PfGW456L13_4089

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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4,593,307 + PfGW456L13_4087 0.40 +0.2
4,593,307 + PfGW456L13_4087 0.40 -0.3
4,593,308 - PfGW456L13_4087 0.40 +0.9
4,593,308 - PfGW456L13_4087 0.40 +0.1
4,593,308 - PfGW456L13_4087 0.40 -0.1
4,593,308 - PfGW456L13_4087 0.40 +0.8
4,593,335 - PfGW456L13_4087 0.42 -0.0
4,593,335 - PfGW456L13_4087 0.42 -0.5
4,593,388 + PfGW456L13_4087 0.46 -1.5
4,593,453 - PfGW456L13_4087 0.51 -1.3
4,593,453 - PfGW456L13_4087 0.51 -0.4
4,593,453 - PfGW456L13_4087 0.51 +0.2
4,593,475 + PfGW456L13_4087 0.52 -1.8
4,593,475 + PfGW456L13_4087 0.52 -0.2
4,593,475 + PfGW456L13_4087 0.52 -0.6
4,593,475 + PfGW456L13_4087 0.52 +0.5
4,593,475 + PfGW456L13_4087 0.52 +0.4
4,593,476 - PfGW456L13_4087 0.52 -0.3
4,593,476 - PfGW456L13_4087 0.52 +0.2
4,593,476 - PfGW456L13_4087 0.52 +0.2
4,593,476 - PfGW456L13_4087 0.52 -1.5
4,593,476 - PfGW456L13_4087 0.52 -0.8
4,593,562 + PfGW456L13_4087 0.59 +0.1
4,593,562 + PfGW456L13_4087 0.59 -1.7
4,593,562 + PfGW456L13_4087 0.59 -0.1
4,593,562 + PfGW456L13_4087 0.59 -0.1
4,593,562 + PfGW456L13_4087 0.59 -0.5
4,593,563 - PfGW456L13_4087 0.59 +0.2
4,593,572 - PfGW456L13_4087 0.60 -1.1
4,593,808 + PfGW456L13_4087 0.78 -0.2
4,593,808 + PfGW456L13_4087 0.78 -0.5
4,593,808 + PfGW456L13_4087 0.78 -0.3
4,593,809 - PfGW456L13_4087 0.78 -1.1
4,593,809 - PfGW456L13_4087 0.78 +0.9
4,593,809 - PfGW456L13_4087 0.78 +1.5
4,593,809 - PfGW456L13_4087 0.78 -0.0
4,593,860 - PfGW456L13_4087 0.82 +0.7
4,593,955 + PfGW456L13_4087 0.89 -0.8
4,593,955 + PfGW456L13_4087 0.89 -0.2
4,593,955 + PfGW456L13_4087 0.89 +1.1
4,593,955 + PfGW456L13_4087 0.89 +2.1
4,593,956 - PfGW456L13_4087 0.89 -0.9
4,594,063 + +0.2
4,594,064 - -0.1
4,594,064 - -0.8
4,594,064 - +0.1
4,594,064 - +0.3
4,594,156 + +0.9
4,594,156 + +0.5
4,594,157 - -0.7
4,594,157 - +0.3
4,594,157 - +0.1
4,594,157 - -0.4
4,594,157 - -0.6
4,594,157 - -0.7
4,594,157 - +1.4
4,594,157 - -0.9
4,594,157 - +0.9
4,594,158 + +0.1
4,594,158 + +0.6
4,594,158 + +0.2
4,594,158 + -0.3
4,594,158 + -1.2
4,594,158 + -0.9
4,594,158 + +0.3
4,594,159 - +0.7
4,594,159 - -2.0
4,594,159 - -0.2
4,594,159 - -0.1
4,594,159 - +0.5
4,594,159 - +0.4
4,594,159 - +1.3
4,594,159 - -0.1
4,594,165 - +0.7
4,594,259 - -0.1
4,594,259 - +1.1
4,594,259 - -0.2
4,594,499 - PfGW456L13_4088 0.30 -1.0
4,594,946 + PfGW456L13_4088 0.88 -0.9
4,594,947 - PfGW456L13_4088 0.88 -2.5
4,594,947 - PfGW456L13_4088 0.88 -1.4
4,594,955 - PfGW456L13_4088 0.89 -1.4
4,595,080 + -1.3
4,595,080 + -1.4
4,595,081 - +0.7
4,595,081 - +0.0
4,595,081 - +0.1
4,595,109 - +0.0
4,595,161 + -0.5
4,595,161 + +1.4
4,595,161 + -0.7
4,595,162 - -0.1
4,595,162 - -0.8
4,595,185 + +1.8
4,595,201 + +0.1
4,595,214 - +0.4
4,595,240 + +1.5
4,595,373 + +1.9
4,595,373 + +0.4
4,595,374 - -1.5
4,595,374 - +0.1
4,595,483 - -0.3
4,595,686 + PfGW456L13_4089 0.24 +0.3
4,595,707 + PfGW456L13_4089 0.26 +0.2
4,595,707 + PfGW456L13_4089 0.26 +0.5
4,595,707 + PfGW456L13_4089 0.26 -1.1
4,595,707 + -0.2
4,595,707 + PfGW456L13_4089 0.26 +0.3
4,595,707 + PfGW456L13_4089 0.26 -0.6
4,595,707 + PfGW456L13_4089 0.26 -0.0
4,595,707 + PfGW456L13_4089 0.26 +0.8
4,595,708 - PfGW456L13_4089 0.26 +0.3
4,595,708 - PfGW456L13_4089 0.26 -0.0
4,595,708 - PfGW456L13_4089 0.26 +0.3
4,595,708 - PfGW456L13_4089 0.26 +0.5
4,595,708 - PfGW456L13_4089 0.26 +0.2
4,595,708 - PfGW456L13_4089 0.26 +0.4
4,595,708 - PfGW456L13_4089 0.26 +0.2
4,595,708 - PfGW456L13_4089 0.26 -1.3
4,595,708 - PfGW456L13_4089 0.26 -0.5
4,595,708 - PfGW456L13_4089 0.26 +0.2
4,595,708 - PfGW456L13_4089 0.26 +0.1
4,595,708 - PfGW456L13_4089 0.26 +0.0
4,595,708 - PfGW456L13_4089 0.26 +0.6
4,595,708 - PfGW456L13_4089 0.26 -0.0
4,595,708 - PfGW456L13_4089 0.26 +1.1
4,595,708 - PfGW456L13_4089 0.26 -1.4
4,595,709 + PfGW456L13_4089 0.26 -0.9
4,595,709 + PfGW456L13_4089 0.26 +1.2
4,595,709 + PfGW456L13_4089 0.26 +0.6
4,595,709 + PfGW456L13_4089 0.26 -0.9
4,595,710 - PfGW456L13_4089 0.26 +0.1
4,595,710 - PfGW456L13_4089 0.26 +0.2
4,595,710 - PfGW456L13_4089 0.26 -1.0
4,595,710 - PfGW456L13_4089 0.26 -1.3
4,595,710 - PfGW456L13_4089 0.26 -0.3
4,595,710 - PfGW456L13_4089 0.26 -0.3
4,595,710 - PfGW456L13_4089 0.26 -0.6
4,595,712 + PfGW456L13_4089 0.26 -0.8
4,595,712 + PfGW456L13_4089 0.26 -0.1
4,595,712 + PfGW456L13_4089 0.26 -0.7
4,595,712 + PfGW456L13_4089 0.26 -0.4
4,595,712 + PfGW456L13_4089 0.26 +0.0
4,595,712 + PfGW456L13_4089 0.26 -1.7
4,595,712 + PfGW456L13_4089 0.26 -0.2
4,595,713 - PfGW456L13_4089 0.26 -0.8
4,595,713 - PfGW456L13_4089 0.26 +0.5
4,595,713 - PfGW456L13_4089 0.26 -0.6
4,595,870 + PfGW456L13_4089 0.39 +0.0
4,595,871 - PfGW456L13_4089 0.39 +0.0
4,595,890 + PfGW456L13_4089 0.41 +0.1
4,595,890 + PfGW456L13_4089 0.41 +2.0
4,595,890 + PfGW456L13_4089 0.41 -1.2
4,595,890 + PfGW456L13_4089 0.41 +0.1
4,595,891 - PfGW456L13_4089 0.41 +0.8
4,595,921 - PfGW456L13_4089 0.44 -0.3
4,595,921 - PfGW456L13_4089 0.44 +1.0

Or see this region's nucleotide sequence