Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3892 and PfGW456L13_5218 are separated by 92 nucleotides PfGW456L13_5218 and PfGW456L13_3893 are separated by 89 nucleotides PfGW456L13_3893 and PfGW456L13_3894 overlap by 20 nucleotides PfGW456L13_3894 and PfGW456L13_3895 are separated by 3 nucleotides
PfGW456L13_3892 - Integrase, at 4,369,339 to 4,369,833
_3892
PfGW456L13_5218 - tRNA-Pro-GGG, at 4,369,926 to 4,369,999
_5218
PfGW456L13_3893 - Transcriptional regulator, MerR family, at 4,370,089 to 4,370,445
_3893
PfGW456L13_3894 - Integration host factor alpha subunit, at 4,370,426 to 4,370,728
_3894
PfGW456L13_3895 - Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20), at 4,370,732 to 4,373,110
_3895
Position (kb) 4370
4371 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4369.450 kb on + strand, within PfGW456L13_3892 at 4369.450 kb on + strand, within PfGW456L13_3892 at 4369.450 kb on + strand, within PfGW456L13_3892 at 4369.451 kb on - strand, within PfGW456L13_3892 at 4369.451 kb on - strand, within PfGW456L13_3892 at 4369.451 kb on - strand, within PfGW456L13_3892 at 4369.451 kb on - strand, within PfGW456L13_3892 at 4369.451 kb on - strand, within PfGW456L13_3892 at 4369.451 kb on - strand, within PfGW456L13_3892 at 4369.451 kb on - strand, within PfGW456L13_3892 at 4369.582 kb on + strand, within PfGW456L13_3892 at 4369.582 kb on + strand, within PfGW456L13_3892 at 4369.582 kb on + strand, within PfGW456L13_3892 at 4369.582 kb on + strand, within PfGW456L13_3892 at 4369.582 kb on + strand, within PfGW456L13_3892 at 4369.583 kb on - strand, within PfGW456L13_3892 at 4369.583 kb on - strand at 4369.627 kb on + strand, within PfGW456L13_3892 at 4369.627 kb on + strand, within PfGW456L13_3892 at 4369.759 kb on + strand, within PfGW456L13_3892 at 4369.812 kb on + strand at 4369.886 kb on - strand at 4369.917 kb on + strand at 4369.917 kb on + strand at 4369.958 kb on - strand, within PfGW456L13_5218 at 4369.970 kb on + strand, within PfGW456L13_5218 at 4369.971 kb on - strand, within PfGW456L13_5218 at 4370.002 kb on + strand at 4370.047 kb on - strand at 4370.153 kb on + strand, within PfGW456L13_3893 at 4370.153 kb on + strand, within PfGW456L13_3893 at 4370.154 kb on - strand, within PfGW456L13_3893 at 4370.154 kb on - strand, within PfGW456L13_3893 at 4370.154 kb on - strand, within PfGW456L13_3893 at 4370.154 kb on - strand, within PfGW456L13_3893 at 4370.229 kb on - strand, within PfGW456L13_3893 at 4370.277 kb on - strand, within PfGW456L13_3893 at 4370.356 kb on + strand, within PfGW456L13_3893 at 4370.393 kb on + strand, within PfGW456L13_3893 at 4370.394 kb on - strand, within PfGW456L13_3893 at 4370.445 kb on + strand at 4370.445 kb on + strand at 4370.446 kb on - strand at 4370.446 kb on - strand at 4370.446 kb on - strand at 4370.688 kb on + strand, within PfGW456L13_3894 at 4370.689 kb on - strand, within PfGW456L13_3894 at 4370.729 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 4,369,450 + PfGW456L13_3892 0.22 +0.7 4,369,450 + PfGW456L13_3892 0.22 -0.3 4,369,450 + PfGW456L13_3892 0.22 -0.4 4,369,451 - PfGW456L13_3892 0.23 -0.1 4,369,451 - PfGW456L13_3892 0.23 -0.3 4,369,451 - PfGW456L13_3892 0.23 -2.0 4,369,451 - PfGW456L13_3892 0.23 +0.6 4,369,451 - PfGW456L13_3892 0.23 -1.1 4,369,451 - PfGW456L13_3892 0.23 +0.7 4,369,451 - PfGW456L13_3892 0.23 -0.1 4,369,582 + PfGW456L13_3892 0.49 +0.8 4,369,582 + PfGW456L13_3892 0.49 +0.2 4,369,582 + PfGW456L13_3892 0.49 -0.9 4,369,582 + PfGW456L13_3892 0.49 -1.3 4,369,582 + PfGW456L13_3892 0.49 -0.6 4,369,583 - PfGW456L13_3892 0.49 +1.5 4,369,583 - -0.5 4,369,627 + PfGW456L13_3892 0.58 +0.9 4,369,627 + PfGW456L13_3892 0.58 +0.5 4,369,759 + PfGW456L13_3892 0.85 +0.7 4,369,812 + +0.2 4,369,886 - +0.7 4,369,917 + -0.3 4,369,917 + +1.3 4,369,958 - PfGW456L13_5218 0.43 -2.6 4,369,970 + PfGW456L13_5218 0.59 +1.3 4,369,971 - PfGW456L13_5218 0.61 +1.1 4,370,002 + +0.1 4,370,047 - -0.0 4,370,153 + PfGW456L13_3893 0.18 +0.1 4,370,153 + PfGW456L13_3893 0.18 +0.3 4,370,154 - PfGW456L13_3893 0.18 +0.2 4,370,154 - PfGW456L13_3893 0.18 +0.2 4,370,154 - PfGW456L13_3893 0.18 -0.7 4,370,154 - PfGW456L13_3893 0.18 +0.9 4,370,229 - PfGW456L13_3893 0.39 -0.1 4,370,277 - PfGW456L13_3893 0.53 -0.5 4,370,356 + PfGW456L13_3893 0.75 -0.1 4,370,393 + PfGW456L13_3893 0.85 -0.2 4,370,394 - PfGW456L13_3893 0.85 +0.5 4,370,445 + -1.7 4,370,445 + -1.0 4,370,446 - -2.8 4,370,446 - -1.8 4,370,446 - -1.7 4,370,688 + PfGW456L13_3894 0.86 -1.2 4,370,689 - PfGW456L13_3894 0.87 -1.5 4,370,729 - -3.0
Or see this region's nucleotide sequence