Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_356 and PfGW456L13_357 are separated by 148 nucleotides PfGW456L13_357 and PfGW456L13_358 are separated by 78 nucleotides PfGW456L13_358 and PfGW456L13_359 are separated by 9 nucleotides PfGW456L13_359 and PfGW456L13_360 are separated by 42 nucleotides
PfGW456L13_356 - Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase, at 416,862 to 417,638
_356
PfGW456L13_357 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 417,787 to 418,542
_357
PfGW456L13_358 - Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-), at 418,621 to 419,391
_358
PfGW456L13_359 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) <small>(from data)</small>, at 419,401 to 420,138
_359
PfGW456L13_360 - FIG00956267: hypothetical protein, at 420,181 to 420,438
_360
Position (kb) 418
419
420 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 417.630 kb on + strand at 417.658 kb on + strand at 417.658 kb on + strand at 417.658 kb on + strand at 417.659 kb on - strand at 417.659 kb on - strand at 417.708 kb on + strand at 417.778 kb on + strand at 417.788 kb on + strand at 417.788 kb on + strand at 417.788 kb on + strand at 417.788 kb on + strand at 417.789 kb on - strand at 417.789 kb on - strand at 417.789 kb on - strand at 417.794 kb on + strand at 417.794 kb on + strand at 417.795 kb on - strand at 417.795 kb on - strand at 417.795 kb on - strand at 417.795 kb on - strand at 417.805 kb on + strand at 417.805 kb on + strand at 417.806 kb on - strand at 417.806 kb on - strand at 417.806 kb on - strand at 417.806 kb on - strand at 417.899 kb on + strand, within PfGW456L13_357 at 417.899 kb on + strand, within PfGW456L13_357 at 417.899 kb on + strand, within PfGW456L13_357 at 417.900 kb on - strand, within PfGW456L13_357 at 417.900 kb on - strand, within PfGW456L13_357 at 417.900 kb on - strand, within PfGW456L13_357 at 417.900 kb on - strand, within PfGW456L13_357 at 417.900 kb on - strand, within PfGW456L13_357 at 417.925 kb on + strand, within PfGW456L13_357 at 417.926 kb on - strand, within PfGW456L13_357 at 417.926 kb on - strand, within PfGW456L13_357 at 417.965 kb on + strand at 417.966 kb on - strand, within PfGW456L13_357 at 418.045 kb on + strand, within PfGW456L13_357 at 418.045 kb on + strand, within PfGW456L13_357 at 418.045 kb on + strand, within PfGW456L13_357 at 418.045 kb on + strand, within PfGW456L13_357 at 418.046 kb on - strand, within PfGW456L13_357 at 418.103 kb on + strand, within PfGW456L13_357 at 418.103 kb on + strand, within PfGW456L13_357 at 418.104 kb on - strand, within PfGW456L13_357 at 418.104 kb on - strand, within PfGW456L13_357 at 418.118 kb on + strand, within PfGW456L13_357 at 418.118 kb on + strand, within PfGW456L13_357 at 418.118 kb on + strand, within PfGW456L13_357 at 418.118 kb on + strand, within PfGW456L13_357 at 418.119 kb on - strand, within PfGW456L13_357 at 418.119 kb on - strand, within PfGW456L13_357 at 418.119 kb on - strand, within PfGW456L13_357 at 418.253 kb on - strand, within PfGW456L13_357 at 418.253 kb on - strand, within PfGW456L13_357 at 418.253 kb on - strand, within PfGW456L13_357 at 418.286 kb on + strand, within PfGW456L13_357 at 418.287 kb on - strand, within PfGW456L13_357 at 418.287 kb on - strand, within PfGW456L13_357 at 418.322 kb on + strand, within PfGW456L13_357 at 418.322 kb on + strand, within PfGW456L13_357 at 418.322 kb on + strand, within PfGW456L13_357 at 418.323 kb on - strand, within PfGW456L13_357 at 418.323 kb on - strand, within PfGW456L13_357 at 418.323 kb on - strand, within PfGW456L13_357 at 418.323 kb on - strand, within PfGW456L13_357 at 418.323 kb on - strand, within PfGW456L13_357 at 418.326 kb on + strand, within PfGW456L13_357 at 418.326 kb on + strand, within PfGW456L13_357 at 418.326 kb on + strand, within PfGW456L13_357 at 418.326 kb on + strand, within PfGW456L13_357 at 418.326 kb on + strand, within PfGW456L13_357 at 418.326 kb on + strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.345 kb on + strand, within PfGW456L13_357 at 418.345 kb on + strand, within PfGW456L13_357 at 418.345 kb on + strand, within PfGW456L13_357 at 418.345 kb on + strand, within PfGW456L13_357 at 418.346 kb on - strand, within PfGW456L13_357 at 418.424 kb on + strand, within PfGW456L13_357 at 418.425 kb on - strand, within PfGW456L13_357 at 418.425 kb on - strand, within PfGW456L13_357 at 418.536 kb on + strand at 418.536 kb on + strand at 418.536 kb on + strand at 418.537 kb on - strand at 418.537 kb on - strand at 418.537 kb on - strand at 418.622 kb on + strand at 418.623 kb on - strand at 418.650 kb on + strand at 418.651 kb on - strand at 418.651 kb on - strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.676 kb on + strand at 418.677 kb on - strand at 419.248 kb on - strand, within PfGW456L13_358 at 419.248 kb on - strand, within PfGW456L13_358 at 419.273 kb on + strand, within PfGW456L13_358 at 419.411 kb on + strand at 419.411 kb on + strand at 419.411 kb on + strand at 419.412 kb on - strand at 419.412 kb on - strand at 419.412 kb on - strand at 419.412 kb on - strand at 419.412 kb on - strand at 419.412 kb on - strand at 419.459 kb on + strand at 419.460 kb on - strand at 419.460 kb on - strand at 419.599 kb on + strand, within PfGW456L13_359 at 419.599 kb on + strand, within PfGW456L13_359 at 419.600 kb on - strand, within PfGW456L13_359 at 419.600 kb on - strand, within PfGW456L13_359 at 419.600 kb on - strand, within PfGW456L13_359 at 419.600 kb on - strand, within PfGW456L13_359 at 419.640 kb on + strand, within PfGW456L13_359 at 419.640 kb on + strand, within PfGW456L13_359 at 419.642 kb on + strand, within PfGW456L13_359 at 419.643 kb on - strand, within PfGW456L13_359 at 419.643 kb on - strand, within PfGW456L13_359 at 419.840 kb on + strand, within PfGW456L13_359 at 419.840 kb on + strand, within PfGW456L13_359 at 419.840 kb on + strand, within PfGW456L13_359 at 419.840 kb on + strand, within PfGW456L13_359 at 419.840 kb on + strand, within PfGW456L13_359 at 419.841 kb on - strand, within PfGW456L13_359 at 419.841 kb on - strand, within PfGW456L13_359 at 419.841 kb on - strand, within PfGW456L13_359 at 419.861 kb on + strand, within PfGW456L13_359 at 419.861 kb on + strand, within PfGW456L13_359 at 419.861 kb on + strand, within PfGW456L13_359 at 419.861 kb on + strand, within PfGW456L13_359 at 419.861 kb on + strand, within PfGW456L13_359 at 419.862 kb on - strand, within PfGW456L13_359 at 419.862 kb on - strand, within PfGW456L13_359 at 420.111 kb on + strand at 420.112 kb on - strand at 420.129 kb on + strand at 420.130 kb on - strand at 420.269 kb on + strand, within PfGW456L13_360 at 420.269 kb on + strand, within PfGW456L13_360 at 420.269 kb on + strand, within PfGW456L13_360 at 420.269 kb on + strand, within PfGW456L13_360 at 420.269 kb on + strand, within PfGW456L13_360 at 420.270 kb on - strand, within PfGW456L13_360 at 420.270 kb on - strand, within PfGW456L13_360 at 420.272 kb on + strand, within PfGW456L13_360 at 420.273 kb on - strand, within PfGW456L13_360
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 417,630 + +0.1 417,658 + +0.2 417,658 + +1.2 417,658 + -0.7 417,659 - -1.2 417,659 - -0.8 417,708 + +0.2 417,778 + +0.6 417,788 + +0.3 417,788 + -0.2 417,788 + -1.5 417,788 + +0.9 417,789 - +0.5 417,789 - +0.9 417,789 - +0.1 417,794 + -0.3 417,794 + +1.1 417,795 - -0.3 417,795 - +2.0 417,795 - +0.2 417,795 - +0.2 417,805 + -0.9 417,805 + -0.1 417,806 - -0.1 417,806 - +0.6 417,806 - -1.3 417,806 - +0.1 417,899 + PfGW456L13_357 0.15 -1.7 417,899 + PfGW456L13_357 0.15 +0.1 417,899 + PfGW456L13_357 0.15 +0.6 417,900 - PfGW456L13_357 0.15 -0.9 417,900 - PfGW456L13_357 0.15 +1.2 417,900 - PfGW456L13_357 0.15 +0.8 417,900 - PfGW456L13_357 0.15 +0.6 417,900 - PfGW456L13_357 0.15 -0.2 417,925 + PfGW456L13_357 0.18 +0.6 417,926 - PfGW456L13_357 0.18 +1.1 417,926 - PfGW456L13_357 0.18 -0.6 417,965 + +1.9 417,966 - PfGW456L13_357 0.24 +0.7 418,045 + PfGW456L13_357 0.34 -0.2 418,045 + PfGW456L13_357 0.34 -0.3 418,045 + PfGW456L13_357 0.34 -0.0 418,045 + PfGW456L13_357 0.34 -0.0 418,046 - PfGW456L13_357 0.34 +0.7 418,103 + PfGW456L13_357 0.42 +0.1 418,103 + PfGW456L13_357 0.42 +0.3 418,104 - PfGW456L13_357 0.42 +0.1 418,104 - PfGW456L13_357 0.42 -0.5 418,118 + PfGW456L13_357 0.44 -1.3 418,118 + PfGW456L13_357 0.44 -0.1 418,118 + PfGW456L13_357 0.44 +1.9 418,118 + PfGW456L13_357 0.44 +1.1 418,119 - PfGW456L13_357 0.44 -1.3 418,119 - PfGW456L13_357 0.44 +0.3 418,119 - PfGW456L13_357 0.44 +0.7 418,253 - PfGW456L13_357 0.62 -0.7 418,253 - PfGW456L13_357 0.62 -2.5 418,253 - PfGW456L13_357 0.62 +0.1 418,286 + PfGW456L13_357 0.66 +0.6 418,287 - PfGW456L13_357 0.66 +0.6 418,287 - PfGW456L13_357 0.66 +0.4 418,322 + PfGW456L13_357 0.71 +0.1 418,322 + PfGW456L13_357 0.71 +0.5 418,322 + PfGW456L13_357 0.71 -1.0 418,323 - PfGW456L13_357 0.71 -0.7 418,323 - PfGW456L13_357 0.71 +0.5 418,323 - PfGW456L13_357 0.71 +1.2 418,323 - PfGW456L13_357 0.71 +0.5 418,323 - PfGW456L13_357 0.71 -0.5 418,326 + PfGW456L13_357 0.71 +0.8 418,326 + PfGW456L13_357 0.71 -1.0 418,326 + PfGW456L13_357 0.71 -0.5 418,326 + PfGW456L13_357 0.71 +0.2 418,326 + PfGW456L13_357 0.71 +0.5 418,326 + PfGW456L13_357 0.71 +0.9 418,327 - PfGW456L13_357 0.71 -0.1 418,327 - PfGW456L13_357 0.71 +0.2 418,327 - PfGW456L13_357 0.71 -0.1 418,327 - PfGW456L13_357 0.71 -0.4 418,327 - PfGW456L13_357 0.71 -1.8 418,327 - PfGW456L13_357 0.71 +0.1 418,327 - PfGW456L13_357 0.71 +0.1 418,327 - PfGW456L13_357 0.71 -0.1 418,345 + PfGW456L13_357 0.74 +0.6 418,345 + PfGW456L13_357 0.74 -0.2 418,345 + PfGW456L13_357 0.74 +0.4 418,345 + PfGW456L13_357 0.74 +0.5 418,346 - PfGW456L13_357 0.74 +0.9 418,424 + PfGW456L13_357 0.84 +0.0 418,425 - PfGW456L13_357 0.84 -2.1 418,425 - PfGW456L13_357 0.84 +0.6 418,536 + -1.0 418,536 + +0.5 418,536 + -0.4 418,537 - +1.4 418,537 - -0.6 418,537 - -0.1 418,622 + +0.3 418,623 - -1.3 418,650 + -3.0 418,651 - -3.6 418,651 - -3.6 418,652 + -2.6 418,652 + -2.3 418,652 + -3.4 418,652 + -2.5 418,652 + -2.7 418,652 + -2.2 418,652 + -2.5 418,652 + -2.1 418,652 + -4.3 418,652 + -3.0 418,652 + -3.3 418,652 + -2.0 418,652 + -1.7 418,653 - -3.0 418,653 - -4.3 418,653 - -3.4 418,653 - -1.5 418,653 - -3.1 418,653 - -3.8 418,653 - -2.2 418,653 - -2.0 418,653 - -3.6 418,653 - -3.3 418,653 - -3.4 418,653 - -3.8 418,653 - -4.1 418,653 - -2.9 418,653 - -2.4 418,653 - -4.7 418,653 - -3.1 418,676 + -1.8 418,677 - -2.7 419,248 - PfGW456L13_358 0.81 -3.7 419,248 - PfGW456L13_358 0.81 -1.7 419,273 + PfGW456L13_358 0.85 -3.3 419,411 + -3.5 419,411 + -3.7 419,411 + -3.4 419,412 - +0.8 419,412 - +0.6 419,412 - -0.1 419,412 - +0.2 419,412 - -0.9 419,412 - +0.4 419,459 + -2.0 419,460 - -3.5 419,460 - -1.8 419,599 + PfGW456L13_359 0.27 -2.9 419,599 + PfGW456L13_359 0.27 -2.8 419,600 - PfGW456L13_359 0.27 -3.3 419,600 - PfGW456L13_359 0.27 -2.2 419,600 - PfGW456L13_359 0.27 -4.5 419,600 - PfGW456L13_359 0.27 -1.9 419,640 + PfGW456L13_359 0.32 -4.4 419,640 + PfGW456L13_359 0.32 -3.2 419,642 + PfGW456L13_359 0.33 -3.1 419,643 - PfGW456L13_359 0.33 -1.5 419,643 - PfGW456L13_359 0.33 -2.0 419,840 + PfGW456L13_359 0.59 -1.5 419,840 + PfGW456L13_359 0.59 -3.4 419,840 + PfGW456L13_359 0.59 -0.3 419,840 + PfGW456L13_359 0.59 -4.5 419,840 + PfGW456L13_359 0.59 -2.9 419,841 - PfGW456L13_359 0.60 -3.5 419,841 - PfGW456L13_359 0.60 -2.1 419,841 - PfGW456L13_359 0.60 -2.2 419,861 + PfGW456L13_359 0.62 -3.6 419,861 + PfGW456L13_359 0.62 -4.4 419,861 + PfGW456L13_359 0.62 -3.4 419,861 + PfGW456L13_359 0.62 -2.0 419,861 + PfGW456L13_359 0.62 -3.4 419,862 - PfGW456L13_359 0.62 -3.4 419,862 - PfGW456L13_359 0.62 +0.3 420,111 + -1.6 420,112 - -4.6 420,129 + -1.6 420,130 - -4.9 420,269 + PfGW456L13_360 0.34 -2.1 420,269 + PfGW456L13_360 0.34 -3.9 420,269 + PfGW456L13_360 0.34 -3.3 420,269 + PfGW456L13_360 0.34 -4.0 420,269 + PfGW456L13_360 0.34 -2.3 420,270 - PfGW456L13_360 0.34 -1.9 420,270 - PfGW456L13_360 0.34 -1.0 420,272 + PfGW456L13_360 0.35 -2.1 420,273 - PfGW456L13_360 0.36 -0.6
Or see this region's nucleotide sequence