Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2662

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2658 and PfGW456L13_2659 overlap by 4 nucleotidesPfGW456L13_2659 and PfGW456L13_2660 overlap by 4 nucleotidesPfGW456L13_2660 and PfGW456L13_2661 overlap by 1 nucleotidesPfGW456L13_2661 and PfGW456L13_2662 are separated by 1 nucleotidesPfGW456L13_2662 and PfGW456L13_2663 are separated by 170 nucleotidesPfGW456L13_2663 and PfGW456L13_2664 are separated by 25 nucleotides PfGW456L13_2658 - Anthranilate phosphoribosyltransferase like (EC 2.4.2.18), at 2,961,051 to 2,962,052 _2658 PfGW456L13_2659 - tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-), at 2,962,049 to 2,962,384 _2659 PfGW456L13_2660 - tRNA 5-methylaminomethyl-2-thiouridine synthase TusB, at 2,962,381 to 2,962,674 _2660 PfGW456L13_2661 - tRNA 5-methylaminomethyl-2-thiouridine synthase TusC, at 2,962,674 to 2,963,036 _2661 PfGW456L13_2662 - tRNA 5-methylaminomethyl-2-thiouridine synthase TusD, at 2,963,038 to 2,963,460 _2662 PfGW456L13_2663 - Membrane protein, putative, at 2,963,631 to 2,964,335 _2663 PfGW456L13_2664 - FIG00957702: hypothetical protein, at 2,964,361 to 2,964,690 _2664 Position (kb) 2963 2964Strain fitness (log2 ratio) -1 0 1 2at 2963.463 kb on + strandat 2963.463 kb on + strandat 2963.642 kb on + strandat 2963.642 kb on + strandat 2963.642 kb on + strandat 2963.642 kb on + strandat 2963.643 kb on - strandat 2963.643 kb on - strandat 2963.643 kb on - strandat 2963.644 kb on + strandat 2963.645 kb on - strandat 2963.645 kb on - strandat 2963.878 kb on + strand, within PfGW456L13_2663at 2963.878 kb on + strand, within PfGW456L13_2663at 2963.878 kb on + strand, within PfGW456L13_2663at 2963.878 kb on + strand, within PfGW456L13_2663at 2963.878 kb on + strand, within PfGW456L13_2663at 2963.879 kb on - strand, within PfGW456L13_2663at 2963.879 kb on - strand, within PfGW456L13_2663at 2963.879 kb on - strand, within PfGW456L13_2663at 2963.879 kb on - strand, within PfGW456L13_2663at 2963.879 kb on - strand, within PfGW456L13_2663at 2963.879 kb on - strand, within PfGW456L13_2663at 2963.879 kb on - strand, within PfGW456L13_2663at 2963.904 kb on + strand, within PfGW456L13_2663at 2963.904 kb on + strand, within PfGW456L13_2663at 2963.905 kb on - strand, within PfGW456L13_2663at 2963.977 kb on + strand, within PfGW456L13_2663at 2964.021 kb on + strand, within PfGW456L13_2663at 2964.021 kb on + strand, within PfGW456L13_2663at 2964.022 kb on - strand, within PfGW456L13_2663at 2964.022 kb on - strand, within PfGW456L13_2663at 2964.138 kb on - strand, within PfGW456L13_2663at 2964.164 kb on + strand, within PfGW456L13_2663at 2964.164 kb on + strand, within PfGW456L13_2663at 2964.164 kb on + strand, within PfGW456L13_2663at 2964.165 kb on - strand, within PfGW456L13_2663at 2964.264 kb on + strand, within PfGW456L13_2663at 2964.265 kb on - strandat 2964.265 kb on - strandat 2964.265 kb on - strandat 2964.371 kb on - strandat 2964.390 kb on - strandat 2964.455 kb on + strand, within PfGW456L13_2664at 2964.456 kb on - strand, within PfGW456L13_2664

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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2,963,463 + -1.2
2,963,463 + -0.6
2,963,642 + +0.6
2,963,642 + -0.8
2,963,642 + +1.6
2,963,642 + +0.1
2,963,643 - +0.4
2,963,643 - +0.2
2,963,643 - -1.0
2,963,644 + -1.3
2,963,645 - +0.1
2,963,645 - +0.9
2,963,878 + PfGW456L13_2663 0.35 +1.1
2,963,878 + PfGW456L13_2663 0.35 +0.1
2,963,878 + PfGW456L13_2663 0.35 -0.7
2,963,878 + PfGW456L13_2663 0.35 +0.4
2,963,878 + PfGW456L13_2663 0.35 +0.2
2,963,879 - PfGW456L13_2663 0.35 +0.8
2,963,879 - PfGW456L13_2663 0.35 +0.3
2,963,879 - PfGW456L13_2663 0.35 -0.4
2,963,879 - PfGW456L13_2663 0.35 -0.4
2,963,879 - PfGW456L13_2663 0.35 -0.2
2,963,879 - PfGW456L13_2663 0.35 +0.3
2,963,879 - PfGW456L13_2663 0.35 +0.2
2,963,904 + PfGW456L13_2663 0.39 +1.1
2,963,904 + PfGW456L13_2663 0.39 -0.9
2,963,905 - PfGW456L13_2663 0.39 +0.8
2,963,977 + PfGW456L13_2663 0.49 -0.2
2,964,021 + PfGW456L13_2663 0.55 -0.1
2,964,021 + PfGW456L13_2663 0.55 +0.4
2,964,022 - PfGW456L13_2663 0.55 +0.4
2,964,022 - PfGW456L13_2663 0.55 +0.2
2,964,138 - PfGW456L13_2663 0.72 +0.1
2,964,164 + PfGW456L13_2663 0.76 -0.6
2,964,164 + PfGW456L13_2663 0.76 -0.2
2,964,164 + PfGW456L13_2663 0.76 +0.3
2,964,165 - PfGW456L13_2663 0.76 +1.8
2,964,264 + PfGW456L13_2663 0.90 +0.2
2,964,265 - -0.4
2,964,265 - +1.1
2,964,265 - +1.0
2,964,371 - -0.1
2,964,390 - +0.7
2,964,455 + PfGW456L13_2664 0.28 -0.5
2,964,456 - PfGW456L13_2664 0.29 -0.4

Or see this region's nucleotide sequence