Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2658 and PfGW456L13_2659 overlap by 4 nucleotides PfGW456L13_2659 and PfGW456L13_2660 overlap by 4 nucleotides PfGW456L13_2660 and PfGW456L13_2661 overlap by 1 nucleotides PfGW456L13_2661 and PfGW456L13_2662 are separated by 1 nucleotides PfGW456L13_2662 and PfGW456L13_2663 are separated by 170 nucleotides PfGW456L13_2663 and PfGW456L13_2664 are separated by 25 nucleotides
PfGW456L13_2658 - Anthranilate phosphoribosyltransferase like (EC 2.4.2.18), at 2,961,051 to 2,962,052
_2658
PfGW456L13_2659 - tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-), at 2,962,049 to 2,962,384
_2659
PfGW456L13_2660 - tRNA 5-methylaminomethyl-2-thiouridine synthase TusB, at 2,962,381 to 2,962,674
_2660
PfGW456L13_2661 - tRNA 5-methylaminomethyl-2-thiouridine synthase TusC, at 2,962,674 to 2,963,036
_2661
PfGW456L13_2662 - tRNA 5-methylaminomethyl-2-thiouridine synthase TusD, at 2,963,038 to 2,963,460
_2662
PfGW456L13_2663 - Membrane protein, putative, at 2,963,631 to 2,964,335
_2663
PfGW456L13_2664 - FIG00957702: hypothetical protein, at 2,964,361 to 2,964,690
_2664
Position (kb)
2963
2964 Strain fitness (log2 ratio)
-1
0
1
2 at 2963.463 kb on + strand at 2963.463 kb on + strand at 2963.642 kb on + strand at 2963.642 kb on + strand at 2963.642 kb on + strand at 2963.642 kb on + strand at 2963.643 kb on - strand at 2963.643 kb on - strand at 2963.643 kb on - strand at 2963.644 kb on + strand at 2963.645 kb on - strand at 2963.645 kb on - strand at 2963.878 kb on + strand, within PfGW456L13_2663 at 2963.878 kb on + strand, within PfGW456L13_2663 at 2963.878 kb on + strand, within PfGW456L13_2663 at 2963.878 kb on + strand, within PfGW456L13_2663 at 2963.878 kb on + strand, within PfGW456L13_2663 at 2963.879 kb on - strand, within PfGW456L13_2663 at 2963.879 kb on - strand, within PfGW456L13_2663 at 2963.879 kb on - strand, within PfGW456L13_2663 at 2963.879 kb on - strand, within PfGW456L13_2663 at 2963.879 kb on - strand, within PfGW456L13_2663 at 2963.879 kb on - strand, within PfGW456L13_2663 at 2963.879 kb on - strand, within PfGW456L13_2663 at 2963.904 kb on + strand, within PfGW456L13_2663 at 2963.904 kb on + strand, within PfGW456L13_2663 at 2963.905 kb on - strand, within PfGW456L13_2663 at 2963.977 kb on + strand, within PfGW456L13_2663 at 2964.021 kb on + strand, within PfGW456L13_2663 at 2964.021 kb on + strand, within PfGW456L13_2663 at 2964.022 kb on - strand, within PfGW456L13_2663 at 2964.022 kb on - strand, within PfGW456L13_2663 at 2964.138 kb on - strand, within PfGW456L13_2663 at 2964.164 kb on + strand, within PfGW456L13_2663 at 2964.164 kb on + strand, within PfGW456L13_2663 at 2964.164 kb on + strand, within PfGW456L13_2663 at 2964.165 kb on - strand, within PfGW456L13_2663 at 2964.264 kb on + strand, within PfGW456L13_2663 at 2964.265 kb on - strand at 2964.265 kb on - strand at 2964.265 kb on - strand at 2964.371 kb on - strand at 2964.390 kb on - strand at 2964.455 kb on + strand, within PfGW456L13_2664 at 2964.456 kb on - strand, within PfGW456L13_2664
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 2,963,463 + -1.2 2,963,463 + -0.6 2,963,642 + +0.6 2,963,642 + -0.8 2,963,642 + +1.6 2,963,642 + +0.1 2,963,643 - +0.4 2,963,643 - +0.2 2,963,643 - -1.0 2,963,644 + -1.3 2,963,645 - +0.1 2,963,645 - +0.9 2,963,878 + PfGW456L13_2663 0.35 +1.1 2,963,878 + PfGW456L13_2663 0.35 +0.1 2,963,878 + PfGW456L13_2663 0.35 -0.7 2,963,878 + PfGW456L13_2663 0.35 +0.4 2,963,878 + PfGW456L13_2663 0.35 +0.2 2,963,879 - PfGW456L13_2663 0.35 +0.8 2,963,879 - PfGW456L13_2663 0.35 +0.3 2,963,879 - PfGW456L13_2663 0.35 -0.4 2,963,879 - PfGW456L13_2663 0.35 -0.4 2,963,879 - PfGW456L13_2663 0.35 -0.2 2,963,879 - PfGW456L13_2663 0.35 +0.3 2,963,879 - PfGW456L13_2663 0.35 +0.2 2,963,904 + PfGW456L13_2663 0.39 +1.1 2,963,904 + PfGW456L13_2663 0.39 -0.9 2,963,905 - PfGW456L13_2663 0.39 +0.8 2,963,977 + PfGW456L13_2663 0.49 -0.2 2,964,021 + PfGW456L13_2663 0.55 -0.1 2,964,021 + PfGW456L13_2663 0.55 +0.4 2,964,022 - PfGW456L13_2663 0.55 +0.4 2,964,022 - PfGW456L13_2663 0.55 +0.2 2,964,138 - PfGW456L13_2663 0.72 +0.1 2,964,164 + PfGW456L13_2663 0.76 -0.6 2,964,164 + PfGW456L13_2663 0.76 -0.2 2,964,164 + PfGW456L13_2663 0.76 +0.3 2,964,165 - PfGW456L13_2663 0.76 +1.8 2,964,264 + PfGW456L13_2663 0.90 +0.2 2,964,265 - -0.4 2,964,265 - +1.1 2,964,265 - +1.0 2,964,371 - -0.1 2,964,390 - +0.7 2,964,455 + PfGW456L13_2664 0.28 -0.5 2,964,456 - PfGW456L13_2664 0.29 -0.4
Or see this region's nucleotide sequence