Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_236 and PfGW456L13_237 are separated by 9 nucleotides PfGW456L13_237 and PfGW456L13_238 overlap by 4 nucleotides PfGW456L13_238 and PfGW456L13_239 overlap by 4 nucleotides PfGW456L13_239 and PfGW456L13_240 are separated by 19 nucleotides PfGW456L13_240 and PfGW456L13_241 overlap by 4 nucleotides
PfGW456L13_236 - Acyl carrier protein (ACP1), at 281,307 to 281,582
_236
PfGW456L13_237 - Acyl carrier protein, at 281,592 to 281,846
_237
PfGW456L13_238 - FIG017861: hypothetical protein, at 281,843 to 282,388
_238
PfGW456L13_239 - FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase / (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-), at 282,385 to 284,064
_239
PfGW456L13_240 - FIG143263: Glycosyl transferase, at 284,084 to 284,791
_240
PfGW456L13_241 - Lysophospholipid acyltransferase, at 284,788 to 285,729
_241
Position (kb) 282
283
284
285 Strain fitness (log2 ratio) -1
0
1 at 281.484 kb on + strand, within PfGW456L13_236 at 281.485 kb on - strand, within PfGW456L13_236 at 281.535 kb on - strand, within PfGW456L13_236 at 281.689 kb on - strand, within PfGW456L13_237 at 281.877 kb on + strand at 281.877 kb on + strand at 281.878 kb on - strand at 281.878 kb on - strand at 281.889 kb on - strand at 281.903 kb on + strand, within PfGW456L13_238 at 281.903 kb on + strand, within PfGW456L13_238 at 282.201 kb on - strand, within PfGW456L13_238 at 282.201 kb on - strand, within PfGW456L13_238 at 282.201 kb on - strand, within PfGW456L13_238 at 282.201 kb on - strand, within PfGW456L13_238 at 282.202 kb on + strand, within PfGW456L13_238 at 282.303 kb on - strand, within PfGW456L13_238 at 282.303 kb on - strand, within PfGW456L13_238 at 282.330 kb on + strand, within PfGW456L13_238 at 282.330 kb on + strand, within PfGW456L13_238 at 282.331 kb on - strand, within PfGW456L13_238 at 282.360 kb on + strand at 282.360 kb on + strand at 282.361 kb on - strand at 282.366 kb on + strand at 282.372 kb on + strand at 282.373 kb on - strand at 282.396 kb on - strand at 282.745 kb on - strand, within PfGW456L13_239 at 282.745 kb on - strand, within PfGW456L13_239 at 282.907 kb on + strand, within PfGW456L13_239 at 282.907 kb on + strand, within PfGW456L13_239 at 282.907 kb on + strand, within PfGW456L13_239 at 282.908 kb on - strand, within PfGW456L13_239 at 283.297 kb on + strand, within PfGW456L13_239 at 283.297 kb on + strand, within PfGW456L13_239 at 283.297 kb on + strand, within PfGW456L13_239 at 283.298 kb on - strand, within PfGW456L13_239 at 283.301 kb on + strand, within PfGW456L13_239 at 283.795 kb on + strand, within PfGW456L13_239 at 283.796 kb on - strand, within PfGW456L13_239 at 283.796 kb on - strand, within PfGW456L13_239 at 283.969 kb on + strand at 283.993 kb on + strand at 283.994 kb on - strand at 283.994 kb on - strand at 284.063 kb on - strand at 284.087 kb on + strand at 284.087 kb on + strand at 284.087 kb on + strand at 284.087 kb on + strand at 284.087 kb on + strand at 284.088 kb on - strand at 284.088 kb on - strand at 284.088 kb on - strand at 284.414 kb on + strand, within PfGW456L13_240 at 284.444 kb on + strand, within PfGW456L13_240 at 284.445 kb on - strand, within PfGW456L13_240 at 284.445 kb on - strand, within PfGW456L13_240 at 284.453 kb on + strand, within PfGW456L13_240 at 284.889 kb on - strand, within PfGW456L13_241 at 284.905 kb on + strand, within PfGW456L13_241 at 284.906 kb on - strand, within PfGW456L13_241 at 284.965 kb on + strand, within PfGW456L13_241 at 284.966 kb on - strand, within PfGW456L13_241
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 281,484 + PfGW456L13_236 0.64 -0.5 281,485 - PfGW456L13_236 0.64 -0.5 281,535 - PfGW456L13_236 0.83 -0.3 281,689 - PfGW456L13_237 0.38 -0.8 281,877 + -0.7 281,877 + +1.0 281,878 - -0.1 281,878 - -0.2 281,889 - +0.3 281,903 + PfGW456L13_238 0.11 -0.2 281,903 + PfGW456L13_238 0.11 +1.2 282,201 - PfGW456L13_238 0.66 +0.8 282,201 - PfGW456L13_238 0.66 -0.7 282,201 - PfGW456L13_238 0.66 -0.9 282,201 - PfGW456L13_238 0.66 +0.8 282,202 + PfGW456L13_238 0.66 -1.6 282,303 - PfGW456L13_238 0.84 -0.1 282,303 - PfGW456L13_238 0.84 +0.7 282,330 + PfGW456L13_238 0.89 -0.6 282,330 + PfGW456L13_238 0.89 +1.0 282,331 - PfGW456L13_238 0.89 -0.8 282,360 + -0.7 282,360 + +0.7 282,361 - -1.6 282,366 + -0.1 282,372 + -0.1 282,373 - -0.2 282,396 - -1.0 282,745 - PfGW456L13_239 0.21 +0.5 282,745 - PfGW456L13_239 0.21 -1.1 282,907 + PfGW456L13_239 0.31 -0.1 282,907 + PfGW456L13_239 0.31 -0.1 282,907 + PfGW456L13_239 0.31 -0.4 282,908 - PfGW456L13_239 0.31 +0.6 283,297 + PfGW456L13_239 0.54 -0.5 283,297 + PfGW456L13_239 0.54 -1.4 283,297 + PfGW456L13_239 0.54 +0.4 283,298 - PfGW456L13_239 0.54 -1.2 283,301 + PfGW456L13_239 0.55 +0.3 283,795 + PfGW456L13_239 0.84 -1.6 283,796 - PfGW456L13_239 0.84 -0.7 283,796 - PfGW456L13_239 0.84 -0.9 283,969 + +0.3 283,993 + -0.2 283,994 - -0.3 283,994 - -1.4 284,063 - -0.6 284,087 + -0.1 284,087 + +0.3 284,087 + +1.1 284,087 + +0.6 284,087 + -0.2 284,088 - +0.2 284,088 - +1.2 284,088 - +0.5 284,414 + PfGW456L13_240 0.47 -0.9 284,444 + PfGW456L13_240 0.51 -0.4 284,445 - PfGW456L13_240 0.51 +0.2 284,445 - PfGW456L13_240 0.51 -0.2 284,453 + PfGW456L13_240 0.52 -0.3 284,889 - PfGW456L13_241 0.11 +0.2 284,905 + PfGW456L13_241 0.12 +1.6 284,906 - PfGW456L13_241 0.13 +0.2 284,965 + PfGW456L13_241 0.19 -0.9 284,966 - PfGW456L13_241 0.19 -0.1
Or see this region's nucleotide sequence