Strain Fitness in Pseudomonas putida KT2440 around PP_5580

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
3,518,280	-				+1.6
3,518,463	+		PP_5579	0.19	-0.8
3,518,469	+		PP_5579	0.20	-0.8
3,518,616	+		PP_5579	0.50	-0.4
3,518,671	-		PP_5579	0.62	-0.3
3,518,740	+		PP_5579	0.76	+0.3
3,518,741	-		PP_5579	0.76	-1.6
3,518,758	+		PP_5579	0.80	-0.3
3,518,795	+		PP_5579	0.88	-0.3
3,518,797	+		PP_5579	0.88	-0.1
3,518,798	-		PP_5579	0.88	+1.1
3,518,851	+				+0.2
3,518,990	-				+0.9
3,519,009	-				-0.7
3,519,107	+				-0.2
3,519,119	-				+1.0
3,519,119	-				+0.3
3,519,146	-				-1.3
3,519,206	+		PP_5580	0.23	-0.8
3,519,323	+		PP_5580	0.74	-0.8
3,519,380	-				-0.5
3,519,457	-				-0.1
3,519,647	-				-1.4
3,519,690	+				-1.3
3,519,733	+				-0.3
3,519,733	+				-0.4
3,519,885	+				+0.1
3,519,924	-				-0.5
3,519,924	-				+0.6
3,519,956	-				-0.3
3,519,956	-				+1.1
3,519,958	+				+0.1
3,519,959	-				-0.4
3,519,976	-				-1.7
3,519,976	-				+0.0
3,519,999	+				+0.5
3,520,028	+				+0.1
3,520,037	+				+0.3
3,520,045	+				+0.2
3,520,083	-				+0.7
3,520,094	-				-0.2