Strain Fitness in Pseudomonas putida KT2440 around PP_5227

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
5,960,223	+		PP_5224	0.64	+0.9
5,960,224	-		PP_5224	0.64	+0.1
5,960,224	-		PP_5224	0.64	-0.3
5,960,224	-		PP_5224	0.64	+0.1
5,960,266	+		PP_5224	0.83	-0.5
5,960,267	-		PP_5224	0.84	-0.3
5,960,298	-				-0.4
5,960,353	-		PP_5225	0.14	-1.4
5,960,665	-				+0.9
5,960,685	-				-0.5
5,960,758	-				-0.5
5,960,758	-				+1.1
5,960,758	-				+0.9
5,960,758	-				+0.4
5,960,778	+				-0.2
5,960,779	-				-0.7
5,960,784	+				-0.8
5,960,784	+				+0.9
5,960,835	+				+0.5
5,960,836	-				+1.5
5,960,837	+				-0.6
5,960,837	+				+0.1
5,960,837	+				-0.4
5,961,121	-				+0.3
5,961,121	-				-0.6
5,961,177	+				-0.3
5,961,178	-				+1.3
5,961,178	-				-0.5
5,961,192	+				+3.0
5,961,192	+				+0.3
5,961,192	+				-0.5
5,961,192	+				-0.6
5,961,193	-				-0.3
5,961,193	-				+0.3
5,961,193	-				+0.5
5,961,193	-				+0.3
5,961,193	-				-0.5
5,961,199	-				-1.8
5,961,199	-				+1.9
5,961,226	-				+0.6
5,961,230	+		PP_5227	0.10	-0.9
5,961,230	+		PP_5227	0.10	+0.3
5,961,230	+		PP_5227	0.10	-1.7
5,961,231	-		PP_5227	0.10	+2.5
5,961,231	-		PP_5227	0.10	-0.9
5,961,231	-		PP_5227	0.10	-0.1
5,961,234	+		PP_5227	0.10	-1.1
5,961,234	+		PP_5227	0.10	-0.7
5,961,234	+		PP_5227	0.10	+0.2
5,961,235	-		PP_5227	0.10	-0.4
5,961,508	+		PP_5227	0.32	-0.4
5,961,509	-		PP_5227	0.32	-0.6
5,961,509	-		PP_5227	0.32	-0.5
5,961,509	-		PP_5227	0.32	-1.7
5,961,585	+		PP_5227	0.38	+1.9
5,961,585	+		PP_5227	0.38	-0.5
5,961,585	+		PP_5227	0.38	-1.1
5,961,585	+		PP_5227	0.38	+1.1
5,961,585	+		PP_5227	0.38	-0.2
5,961,586	-		PP_5227	0.39	-0.5
5,961,586	-		PP_5227	0.39	+0.1
5,961,586	-		PP_5227	0.39	+0.1
5,961,586	-		PP_5227	0.39	-0.7
5,961,586	-		PP_5227	0.39	-1.1
5,961,648	+		PP_5227	0.44	-0.0
5,961,648	+		PP_5227	0.44	+0.3
5,961,648	+		PP_5227	0.44	-0.5
5,961,648	+		PP_5227	0.44	+1.3
5,961,648	+		PP_5227	0.44	-1.0
5,961,648	+		PP_5227	0.44	-0.1
5,961,648	+		PP_5227	0.44	-2.3
5,961,648	+		PP_5227	0.44	+0.0
5,961,649	-		PP_5227	0.44	+0.9
5,961,649	-		PP_5227	0.44	+0.5
5,961,649	-				-0.1
5,961,649	-		PP_5227	0.44	-1.6
5,961,649	-		PP_5227	0.44	-1.5
5,961,649	-		PP_5227	0.44	-1.0
5,961,653	-		PP_5227	0.44	-0.9
5,961,653	-		PP_5227	0.44	-0.7
5,961,667	+		PP_5227	0.45	+0.9
5,961,790	+		PP_5227	0.55	-1.8
5,961,791	-		PP_5227	0.55	-0.6
5,961,867	+		PP_5227	0.61	-1.2
5,962,051	-		PP_5227	0.76	-1.7
5,962,124	+		PP_5227	0.82	-0.8
5,962,195	+		PP_5227	0.87	-1.4
5,962,213	-		PP_5227	0.89	+0.5
5,962,236	+				+0.3
5,962,294	+				+0.8
5,962,323	+				-1.8
5,962,323	+				-0.3
5,962,324	-				-1.7
5,962,324	-				+0.9
5,962,350	+				-0.8
5,962,351	-				-0.1
5,962,371	+				-0.1
5,962,541	-		PP_5228	0.25	+0.3
5,962,830	+		PP_5228	0.59	+1.1