Strain Fitness in Pseudomonas putida KT2440 around PP_4999

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
5,694,635	-		PP_4998	0.36	+0.8
5,694,939	+				+0.8
5,695,191	+				+0.2
5,695,192	-				-1.2
5,695,192	-				+0.2
5,695,192	-				-0.5
5,695,289	-				-1.8
5,695,782	-		PP_4999	0.40	-0.8
5,695,782	-		PP_4999	0.40	-0.8
5,696,047	-		PP_4999	0.61	-0.5
5,696,047	-		PP_4999	0.61	+1.8
5,696,055	-		PP_4999	0.61	-0.8
5,696,511	-				-1.0
5,696,511	-				-1.2
5,696,513	-				+0.8
5,696,550	+				-0.2
5,696,550	+				-0.4
5,696,550	+				+0.2
5,696,551	-				-0.5
5,696,559	+				-1.3
5,696,609	+				-0.4
5,696,609	+				-1.1
5,696,649	+				+0.6
5,696,649	+				+0.2
5,696,650	-				-0.6
5,696,650	-				-1.0
5,696,650	-				+0.2
5,696,650	-				+0.3
5,696,711	+				-1.0
5,696,711	+				-0.3
5,696,712	-				+0.0
5,696,712	-				+0.1
5,697,012	-		PP_5000	0.47	-0.6
5,697,145	-		PP_5000	0.73	+0.5
5,697,360	-				-0.4
5,697,360	-				-1.6