Experiment: Cholinium glutamate 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4991 and PP_4992 are separated by 47 nucleotides PP_4992 and PP_4993 are separated by 238 nucleotides PP_4993 and PP_4994 are separated by 91 nucleotides
PP_4991: PP_4991 - Protein PilH, at 5,689,528 to 5,689,893
_4991
PP_4992: PP_4992 - Protein PilG, at 5,689,941 to 5,690,342
_4992
PP_4993: PP_4993 - Glutathione synthetase, at 5,690,581 to 5,691,534
_4993
PP_4994: PP_4994 - conserved protein of unknown function, at 5,691,626 to 5,692,531
_4994
Position (kb) 5690
5691
5692 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5689.668 kb on + strand, within PP_4991 at 5689.851 kb on - strand, within PP_4991 at 5689.916 kb on - strand at 5689.916 kb on - strand at 5689.916 kb on - strand at 5690.436 kb on - strand at 5690.466 kb on + strand at 5690.692 kb on + strand, within PP_4993 at 5690.692 kb on + strand, within PP_4993 at 5690.692 kb on + strand, within PP_4993 at 5690.692 kb on + strand, within PP_4993 at 5690.693 kb on - strand, within PP_4993 at 5690.693 kb on - strand, within PP_4993 at 5690.713 kb on + strand, within PP_4993 at 5690.713 kb on + strand, within PP_4993 at 5690.714 kb on - strand, within PP_4993 at 5690.714 kb on - strand, within PP_4993 at 5690.881 kb on + strand, within PP_4993 at 5690.881 kb on + strand, within PP_4993 at 5690.882 kb on - strand, within PP_4993 at 5690.882 kb on - strand, within PP_4993 at 5690.913 kb on - strand, within PP_4993 at 5690.922 kb on - strand, within PP_4993 at 5691.181 kb on + strand, within PP_4993 at 5691.245 kb on - strand, within PP_4993 at 5691.245 kb on - strand, within PP_4993 at 5691.415 kb on + strand, within PP_4993 at 5691.416 kb on - strand, within PP_4993 at 5691.473 kb on - strand at 5691.473 kb on - strand at 5691.473 kb on - strand at 5691.521 kb on + strand at 5691.521 kb on + strand at 5691.522 kb on - strand at 5691.550 kb on - strand at 5691.550 kb on - strand at 5691.550 kb on - strand at 5691.557 kb on + strand at 5691.568 kb on - strand at 5691.568 kb on - strand at 5691.581 kb on + strand at 5691.581 kb on + strand at 5691.620 kb on + strand at 5691.621 kb on - strand at 5691.621 kb on - strand at 5692.163 kb on + strand, within PP_4994 at 5692.163 kb on + strand, within PP_4994 at 5692.163 kb on + strand, within PP_4994 at 5692.163 kb on + strand, within PP_4994 at 5692.164 kb on - strand, within PP_4994 at 5692.164 kb on - strand, within PP_4994 at 5692.229 kb on + strand, within PP_4994 at 5692.307 kb on + strand, within PP_4994 at 5692.355 kb on + strand, within PP_4994 at 5692.356 kb on - strand, within PP_4994 at 5692.369 kb on - strand, within PP_4994 at 5692.458 kb on + strand at 5692.459 kb on - strand at 5692.525 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cholinium glutamate 10 vol% remove 5,689,668 + PP_4991 0.38 -0.1 5,689,851 - PP_4991 0.88 +1.8 5,689,916 - -0.4 5,689,916 - -0.6 5,689,916 - +1.8 5,690,436 - +0.2 5,690,466 + -0.8 5,690,692 + PP_4993 0.12 +1.2 5,690,692 + PP_4993 0.12 -1.5 5,690,692 + PP_4993 0.12 -2.0 5,690,692 + PP_4993 0.12 -0.5 5,690,693 - PP_4993 0.12 -1.2 5,690,693 - PP_4993 0.12 -1.4 5,690,713 + PP_4993 0.14 -1.0 5,690,713 + PP_4993 0.14 -2.5 5,690,714 - PP_4993 0.14 -1.2 5,690,714 - PP_4993 0.14 -0.5 5,690,881 + PP_4993 0.31 +0.8 5,690,881 + PP_4993 0.31 -0.7 5,690,882 - PP_4993 0.32 +0.2 5,690,882 - PP_4993 0.32 -0.2 5,690,913 - PP_4993 0.35 -2.7 5,690,922 - PP_4993 0.36 +0.8 5,691,181 + PP_4993 0.63 -0.4 5,691,245 - PP_4993 0.70 -1.4 5,691,245 - PP_4993 0.70 -1.8 5,691,415 + PP_4993 0.87 -1.4 5,691,416 - PP_4993 0.88 -1.4 5,691,473 - -1.2 5,691,473 - +0.8 5,691,473 - -0.5 5,691,521 + +0.4 5,691,521 + -0.5 5,691,522 - -0.0 5,691,550 - +0.3 5,691,550 - -0.4 5,691,550 - +1.1 5,691,557 + -1.1 5,691,568 - -0.9 5,691,568 - -0.3 5,691,581 + -0.5 5,691,581 + +0.8 5,691,620 + +0.4 5,691,621 - +0.5 5,691,621 - -1.0 5,692,163 + PP_4994 0.59 +0.4 5,692,163 + PP_4994 0.59 +0.2 5,692,163 + PP_4994 0.59 -0.2 5,692,163 + PP_4994 0.59 -2.0 5,692,164 - PP_4994 0.59 -1.6 5,692,164 - PP_4994 0.59 -2.5 5,692,229 + PP_4994 0.67 -0.9 5,692,307 + PP_4994 0.75 -1.0 5,692,355 + PP_4994 0.80 -1.8 5,692,356 - PP_4994 0.81 -0.1 5,692,369 - PP_4994 0.82 -0.7 5,692,458 + +1.0 5,692,459 - -1.2 5,692,525 + +0.2
Or see this region's nucleotide sequence