Strain Fitness in Pseudomonas putida KT2440 around PP_4923

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
5,595,584	+		PP_4922	0.74	-0.0
5,595,585	-		PP_4922	0.74	+0.3
5,595,585	-		PP_4922	0.74	-0.1
5,595,612	+		PP_4922	0.75	+0.4
5,595,612	+		PP_4922	0.75	+0.7
5,595,612	+		PP_4922	0.75	+0.2
5,595,613	-		PP_4922	0.75	+0.6
5,595,648	+		PP_4922	0.77	+0.4
5,595,648	+		PP_4922	0.77	+0.1
5,595,648	+		PP_4922	0.77	+0.7
5,595,648	+		PP_4922	0.77	+0.0
5,595,648	+		PP_4922	0.77	+1.0
5,595,648	+		PP_4922	0.77	-0.2
5,595,648	+		PP_4922	0.77	+0.6
5,595,649	-		PP_4922	0.77	+0.5
5,595,649	-		PP_4922	0.77	-0.2
5,595,883	-		PP_4922	0.90	+0.2
5,595,883	-		PP_4922	0.90	-0.3
5,595,883	-		PP_4922	0.90	-0.7
5,595,987	+				+0.3
5,595,987	+				-0.1
5,595,987	+				+0.9
5,595,988	-				+0.1
5,595,988	-				-0.1
5,595,988	-				+0.8
5,595,988	-				+1.0
5,596,103	-				+0.3
5,596,187	+				-0.5
5,596,187	+				+0.2
5,596,187	+				-0.5
5,596,188	-				+1.0
5,596,188	-				+0.2
5,596,188	-				+0.5
5,596,436	+				+0.1
5,596,436	+				+0.7
5,596,437	-				-0.0
5,596,437	-				+2.4
5,596,475	+				-0.5
5,596,499	+				-2.8
5,596,499	+				+0.2
5,596,499	+				-1.0
5,596,500	-				+0.3
5,596,657	-		PP_4923	0.11	-0.1
5,596,929	+		PP_4923	0.30	-1.3
5,596,930	-		PP_4923	0.30	+0.5
5,597,074	-		PP_4923	0.40	-0.1
5,597,160	+		PP_4923	0.46	-0.1
5,597,161	-		PP_4923	0.46	+0.6
5,597,161	-		PP_4923	0.46	+0.6
5,597,161	-		PP_4923	0.46	+1.1
5,597,161	-		PP_4923	0.46	+0.0
5,597,169	-		PP_4923	0.47	+0.5
5,597,182	+		PP_4923	0.48	-2.5
5,597,182	+		PP_4923	0.48	-0.6
5,597,182	+				+2.1
5,597,183	-		PP_4923	0.48	+0.9
5,597,183	-		PP_4923	0.48	+0.2
5,597,183	-		PP_4923	0.48	-0.3
5,597,187	-		PP_4923	0.48	+0.2
5,597,187	-		PP_4923	0.48	-1.3
5,597,198	-		PP_4923	0.49	+1.2
5,597,277	+		PP_4923	0.54	-0.4
5,597,278	-		PP_4923	0.54	+0.1
5,597,415	+		PP_4923	0.64	+1.1
5,597,415	+		PP_4923	0.64	-0.2
5,597,416	-		PP_4923	0.64	+0.4
5,597,416	-		PP_4923	0.64	+0.8
5,597,461	+		PP_4923	0.67	-1.1
5,597,461	+		PP_4923	0.67	-0.0
5,597,462	-		PP_4923	0.67	-0.1
5,597,462	-		PP_4923	0.67	-0.2
5,597,462	-		PP_4923	0.67	-0.4
5,597,470	-		PP_4923	0.68	-1.3
5,597,470	-		PP_4923	0.68	+0.9
5,597,614	+		PP_4923	0.78	+1.1
5,597,615	-		PP_4923	0.78	-0.4
5,597,615	-		PP_4923	0.78	-0.3
5,597,730	+		PP_4923	0.86	+0.4
5,597,730	+		PP_4923	0.86	-0.6
5,597,731	-		PP_4923	0.86	-2.2
5,597,731	-		PP_4923	0.86	-0.4
5,597,748	+		PP_4923	0.87	-0.1
5,597,748	+		PP_4923	0.87	-1.6
5,597,749	-		PP_4923	0.87	-0.3
5,597,757	-		PP_4923	0.88	+0.2
5,597,769	+		PP_4923	0.88	-0.1
5,597,844	+				-0.2
5,597,859	+				+0.9
5,597,859	+				+1.0
5,597,860	-				-0.4
5,598,037	+				+0.1
5,598,038	-				+0.3
5,598,038	-				-0.3
5,598,038	-				+0.1
5,598,108	+				+1.0
5,598,108	+				-0.3
5,598,108	+				+1.8
5,598,108	+				+0.4
5,598,108	+				-0.3
5,598,108	+				-0.4
5,598,108	+				-0.3
5,598,285	+				+0.9
5,598,285	+				-0.6
5,598,285	+				+1.0
5,598,329	+				+0.1
5,598,330	-				-0.1
5,598,343	+				-0.2
5,598,343	+				+0.4
5,598,344	-				+0.4
5,598,344	-				+0.2
5,598,344	-				-0.2
5,598,344	-				-0.3
5,598,344	-				-0.2
5,598,344	-				-1.1
5,598,344	-				-0.4
5,598,344	-				+1.4
5,598,345	+				-0.6
5,598,345	+				+0.6
5,598,345	+				+0.8
5,598,345	+				-0.2
5,598,345	+				+0.6
5,598,346	-				-0.6
5,598,382	+				+0.9
5,598,463	+				+0.4
5,598,522	-				+0.3
5,598,584	+				-0.3
5,598,584	+				+1.6
5,598,584	+				-0.0
5,598,584	+				-0.0
5,598,585	-				+0.3
5,598,585	-				+0.5
5,598,585	-				+0.2
5,598,586	+				+0.2
5,598,586	+				+0.5
5,598,587	-				-0.5
5,598,587	-				+0.4
5,598,587	-				+1.3
5,598,587	-				-0.5
5,598,783	+		PP_4924	0.13	-1.0
5,598,783	+		PP_4924	0.13	+0.5
5,598,784	-		PP_4924	0.13	+0.1
5,598,784	-		PP_4924	0.13	-1.3
5,598,928	+		PP_4924	0.16	-0.2
5,598,928	+		PP_4924	0.16	+0.6
5,598,929	-		PP_4924	0.16	+0.2