Experiment: Cholinium glutamate 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4845 and PP_4846 are separated by 31 nucleotides PP_4846 and PP_4847 are separated by 136 nucleotides PP_4847 and PP_4848 are separated by 2 nucleotides PP_4848 and PP_4849 are separated by 164 nucleotides
PP_4845: PP_4845 - putative Urea ABC transporter, ATP-binding protein, at 5,513,376 to 5,514,074
_4845
PP_4846: PP_4846 - L-amino acid N-acyltransferase, at 5,514,106 to 5,514,621
_4846
PP_4847: PP_4847 - chaperone modulatory of CbpA co-chaperone protein, at 5,514,758 to 5,515,063
_4847
PP_4848: PP_4848 - Curved DNA-binding protein, at 5,515,066 to 5,516,025
_4848
PP_4849: PP_4849 - putative DnaK protein, at 5,516,190 to 5,517,461
_4849
Position (kb) 5515
5516
5517 Strain fitness (log2 ratio) -1
0
1 at 5514.072 kb on + strand at 5514.073 kb on - strand at 5514.152 kb on + strand at 5514.163 kb on + strand, within PP_4846 at 5514.164 kb on - strand, within PP_4846 at 5514.164 kb on - strand, within PP_4846 at 5514.164 kb on - strand, within PP_4846 at 5514.164 kb on - strand, within PP_4846 at 5514.304 kb on + strand, within PP_4846 at 5514.367 kb on + strand, within PP_4846 at 5514.367 kb on + strand, within PP_4846 at 5514.368 kb on - strand, within PP_4846 at 5514.552 kb on + strand, within PP_4846 at 5514.759 kb on + strand at 5514.759 kb on + strand at 5514.760 kb on - strand at 5515.027 kb on + strand, within PP_4847 at 5515.028 kb on - strand, within PP_4847 at 5515.028 kb on - strand, within PP_4847 at 5515.071 kb on + strand at 5515.071 kb on + strand at 5515.071 kb on + strand at 5515.072 kb on - strand at 5515.072 kb on - strand at 5515.179 kb on - strand, within PP_4848 at 5515.814 kb on + strand, within PP_4848 at 5515.815 kb on - strand, within PP_4848 at 5515.868 kb on + strand, within PP_4848 at 5515.869 kb on - strand, within PP_4848 at 5515.931 kb on + strand at 5515.931 kb on + strand at 5515.932 kb on - strand at 5515.932 kb on - strand at 5515.999 kb on + strand at 5516.006 kb on + strand at 5516.006 kb on + strand at 5516.007 kb on - strand at 5516.007 kb on - strand at 5516.007 kb on - strand at 5516.007 kb on - strand at 5516.009 kb on + strand at 5516.009 kb on + strand at 5516.010 kb on - strand at 5516.028 kb on - strand at 5516.028 kb on - strand at 5516.080 kb on + strand at 5516.080 kb on + strand at 5516.080 kb on + strand at 5516.080 kb on + strand at 5516.150 kb on + strand at 5516.150 kb on + strand at 5516.150 kb on + strand at 5516.151 kb on - strand at 5516.151 kb on - strand at 5516.151 kb on - strand at 5516.151 kb on - strand at 5516.151 kb on - strand at 5516.201 kb on - strand at 5516.355 kb on + strand, within PP_4849 at 5516.355 kb on + strand, within PP_4849 at 5516.676 kb on + strand, within PP_4849 at 5516.676 kb on + strand, within PP_4849 at 5516.677 kb on - strand, within PP_4849 at 5516.677 kb on - strand, within PP_4849 at 5516.703 kb on + strand, within PP_4849 at 5516.734 kb on + strand, within PP_4849 at 5516.910 kb on + strand, within PP_4849 at 5516.911 kb on - strand, within PP_4849 at 5516.952 kb on + strand, within PP_4849 at 5516.952 kb on + strand, within PP_4849 at 5516.953 kb on - strand, within PP_4849 at 5516.953 kb on - strand, within PP_4849 at 5516.995 kb on - strand, within PP_4849 at 5516.995 kb on - strand, within PP_4849
Per-strain Table
Position Strand Gene LocusTag Fraction Cholinium glutamate 10 vol% remove 5,514,072 + +1.3 5,514,073 - -0.0 5,514,152 + +0.4 5,514,163 + PP_4846 0.11 -0.1 5,514,164 - PP_4846 0.11 -0.8 5,514,164 - PP_4846 0.11 -0.7 5,514,164 - PP_4846 0.11 +1.6 5,514,164 - PP_4846 0.11 +0.5 5,514,304 + PP_4846 0.38 +0.1 5,514,367 + PP_4846 0.51 +0.6 5,514,367 + PP_4846 0.51 -1.2 5,514,368 - PP_4846 0.51 +0.5 5,514,552 + PP_4846 0.86 +0.7 5,514,759 + +0.2 5,514,759 + -1.4 5,514,760 - +0.0 5,515,027 + PP_4847 0.88 +0.8 5,515,028 - PP_4847 0.88 -1.0 5,515,028 - PP_4847 0.88 -0.0 5,515,071 + -0.3 5,515,071 + -0.6 5,515,071 + +0.6 5,515,072 - +0.6 5,515,072 - +0.1 5,515,179 - PP_4848 0.12 -0.9 5,515,814 + PP_4848 0.78 +0.1 5,515,815 - PP_4848 0.78 -1.0 5,515,868 + PP_4848 0.84 -0.9 5,515,869 - PP_4848 0.84 +0.5 5,515,931 + +0.1 5,515,931 + -0.7 5,515,932 - +0.7 5,515,932 - -0.0 5,515,999 + -0.8 5,516,006 + -0.7 5,516,006 + -0.2 5,516,007 - -0.6 5,516,007 - -0.4 5,516,007 - -0.3 5,516,007 - -0.3 5,516,009 + -0.2 5,516,009 + +0.9 5,516,010 - +0.2 5,516,028 - +0.2 5,516,028 - -0.4 5,516,080 + -0.9 5,516,080 + +0.3 5,516,080 + -0.6 5,516,080 + +1.3 5,516,150 + -0.1 5,516,150 + -0.6 5,516,150 + +0.5 5,516,151 - +0.2 5,516,151 - -1.0 5,516,151 - -1.0 5,516,151 - -1.2 5,516,151 - +0.9 5,516,201 - +0.3 5,516,355 + PP_4849 0.13 +0.2 5,516,355 + PP_4849 0.13 +0.8 5,516,676 + PP_4849 0.38 -1.3 5,516,676 + PP_4849 0.38 -0.2 5,516,677 - PP_4849 0.38 +0.2 5,516,677 - PP_4849 0.38 +0.3 5,516,703 + PP_4849 0.40 +1.3 5,516,734 + PP_4849 0.43 +0.0 5,516,910 + PP_4849 0.57 +0.3 5,516,911 - PP_4849 0.57 +0.5 5,516,952 + PP_4849 0.60 -0.5 5,516,952 + PP_4849 0.60 +0.7 5,516,953 - PP_4849 0.60 +0.1 5,516,953 - PP_4849 0.60 -0.4 5,516,995 - PP_4849 0.63 +0.4 5,516,995 - PP_4849 0.63 +0.5
Or see this region's nucleotide sequence