Strain Fitness in Pseudomonas putida KT2440 around PP_4811

Experiment: Cholinium glutamate 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4809 and PP_4810 are separated by 43 nucleotidesPP_4810 and PP_4811 overlap by 32 nucleotidesPP_4811 and PP_4812 are separated by 305 nucleotidesPP_4812 and PP_4813 are separated by 2 nucleotides PP_4809: PP_4809 - Ribosomal silencing factor RsfS, at 5,472,399 to 5,472,818 _4809 PP_4810: PP_4810 - Probable nicotinate-nucleotide adenylyltransferase, at 5,472,862 to 5,473,554 _4810 PP_4811: PP_4811 - Gamma-glutamyl phosphate reductase, at 5,473,523 to 5,474,794 _4811 PP_4812: PP_4812 - putative 3-methyladenine DNA glycosylase, at 5,475,100 to 5,475,768 _4812 PP_4813: PP_4813 - PAP2 family protein/DedA family protein, at 5,475,771 to 5,477,087 _4813 Position (kb) 5473 5474 5475Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5472.697 kb on + strand, within PP_4809at 5472.698 kb on - strand, within PP_4809at 5472.698 kb on - strand, within PP_4809at 5472.821 kb on - strandat 5472.821 kb on - strandat 5472.821 kb on - strandat 5473.570 kb on - strandat 5473.570 kb on - strandat 5473.570 kb on - strandat 5473.852 kb on - strand, within PP_4811at 5473.898 kb on - strand, within PP_4811at 5473.898 kb on - strand, within PP_4811at 5474.026 kb on - strand, within PP_4811at 5474.092 kb on - strand, within PP_4811at 5474.092 kb on - strand, within PP_4811at 5474.092 kb on - strand, within PP_4811at 5474.419 kb on - strand, within PP_4811at 5474.419 kb on - strand, within PP_4811at 5474.419 kb on - strand, within PP_4811at 5474.482 kb on - strand, within PP_4811at 5474.771 kb on - strandat 5474.832 kb on - strandat 5474.833 kb on + strandat 5474.833 kb on + strandat 5474.834 kb on - strandat 5474.834 kb on - strandat 5474.850 kb on + strandat 5474.850 kb on + strandat 5474.850 kb on + strandat 5474.851 kb on - strandat 5474.851 kb on - strandat 5474.899 kb on + strandat 5474.899 kb on + strandat 5474.899 kb on + strandat 5474.953 kb on - strandat 5474.986 kb on - strandat 5474.986 kb on - strandat 5475.049 kb on + strandat 5475.049 kb on + strandat 5475.050 kb on - strandat 5475.050 kb on - strandat 5475.064 kb on + strandat 5475.065 kb on - strandat 5475.065 kb on - strandat 5475.229 kb on + strand, within PP_4812at 5475.230 kb on - strand, within PP_4812at 5475.230 kb on - strand, within PP_4812at 5475.232 kb on + strand, within PP_4812at 5475.249 kb on + strand, within PP_4812at 5475.269 kb on - strand, within PP_4812at 5475.269 kb on - strand, within PP_4812at 5475.313 kb on + strand, within PP_4812at 5475.313 kb on + strand, within PP_4812at 5475.313 kb on + strand, within PP_4812at 5475.313 kb on + strand, within PP_4812at 5475.313 kb on + strand, within PP_4812at 5475.313 kb on + strand, within PP_4812at 5475.313 kb on + strand, within PP_4812at 5475.313 kb on + strand, within PP_4812at 5475.313 kb on + strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.314 kb on - strand, within PP_4812at 5475.319 kb on + strand, within PP_4812at 5475.319 kb on + strand, within PP_4812at 5475.319 kb on + strand, within PP_4812at 5475.319 kb on + strand, within PP_4812at 5475.319 kb on + strand, within PP_4812at 5475.319 kb on + strand, within PP_4812at 5475.320 kb on - strand, within PP_4812at 5475.320 kb on - strand, within PP_4812at 5475.320 kb on - strand, within PP_4812at 5475.320 kb on - strand, within PP_4812at 5475.320 kb on - strand, within PP_4812at 5475.322 kb on + strand, within PP_4812at 5475.323 kb on - strand, within PP_4812at 5475.323 kb on - strand, within PP_4812at 5475.394 kb on + strand, within PP_4812at 5475.512 kb on + strand, within PP_4812at 5475.512 kb on + strand, within PP_4812at 5475.512 kb on + strand, within PP_4812at 5475.512 kb on + strand, within PP_4812at 5475.513 kb on - strand, within PP_4812at 5475.513 kb on - strand, within PP_4812at 5475.577 kb on + strand, within PP_4812at 5475.578 kb on - strand, within PP_4812at 5475.685 kb on + strand, within PP_4812

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholinium glutamate 10 vol%
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5,472,697 + PP_4809 0.71 +0.1
5,472,698 - PP_4809 0.71 -0.0
5,472,698 - PP_4809 0.71 -0.9
5,472,821 - -1.0
5,472,821 - +0.3
5,472,821 - +0.2
5,473,570 - -0.1
5,473,570 - -2.0
5,473,570 - -0.1
5,473,852 - PP_4811 0.26 -1.0
5,473,898 - PP_4811 0.29 -0.4
5,473,898 - PP_4811 0.29 +0.9
5,474,026 - PP_4811 0.40 +0.5
5,474,092 - PP_4811 0.45 -0.1
5,474,092 - PP_4811 0.45 -0.2
5,474,092 - PP_4811 0.45 -1.4
5,474,419 - PP_4811 0.70 +0.6
5,474,419 - PP_4811 0.70 -0.6
5,474,419 - PP_4811 0.70 -0.6
5,474,482 - PP_4811 0.75 -0.8
5,474,771 - -0.9
5,474,832 - +4.0
5,474,833 + +0.1
5,474,833 + +0.5
5,474,834 - +1.3
5,474,834 - +0.4
5,474,850 + -0.1
5,474,850 + +0.1
5,474,850 + +0.1
5,474,851 - +0.6
5,474,851 - -0.9
5,474,899 + -0.0
5,474,899 + -0.5
5,474,899 + -1.3
5,474,953 - +1.2
5,474,986 - -0.1
5,474,986 - -0.1
5,475,049 + -1.0
5,475,049 + +0.1
5,475,050 - -0.1
5,475,050 - +1.0
5,475,064 + -0.0
5,475,065 - +0.9
5,475,065 - +0.4
5,475,229 + PP_4812 0.19 +0.7
5,475,230 - PP_4812 0.19 -0.6
5,475,230 - PP_4812 0.19 +0.4
5,475,232 + PP_4812 0.20 +0.1
5,475,249 + PP_4812 0.22 -1.3
5,475,269 - PP_4812 0.25 +0.3
5,475,269 - PP_4812 0.25 -1.0
5,475,313 + PP_4812 0.32 -2.1
5,475,313 + PP_4812 0.32 -0.2
5,475,313 + PP_4812 0.32 +0.9
5,475,313 + PP_4812 0.32 -0.8
5,475,313 + PP_4812 0.32 +0.9
5,475,313 + PP_4812 0.32 -0.1
5,475,313 + PP_4812 0.32 -0.4
5,475,313 + PP_4812 0.32 -0.9
5,475,313 + PP_4812 0.32 -0.4
5,475,314 - PP_4812 0.32 -0.3
5,475,314 - PP_4812 0.32 +0.2
5,475,314 - PP_4812 0.32 -1.4
5,475,314 - PP_4812 0.32 -0.3
5,475,314 - PP_4812 0.32 +0.8
5,475,314 - PP_4812 0.32 +1.0
5,475,314 - PP_4812 0.32 +0.0
5,475,314 - PP_4812 0.32 +1.7
5,475,314 - PP_4812 0.32 +0.3
5,475,314 - PP_4812 0.32 -0.3
5,475,314 - PP_4812 0.32 +1.2
5,475,314 - PP_4812 0.32 -1.7
5,475,314 - PP_4812 0.32 -0.4
5,475,314 - PP_4812 0.32 -0.2
5,475,314 - PP_4812 0.32 +1.1
5,475,314 - PP_4812 0.32 -1.7
5,475,319 + PP_4812 0.33 -0.9
5,475,319 + PP_4812 0.33 -0.9
5,475,319 + PP_4812 0.33 -0.4
5,475,319 + PP_4812 0.33 -0.6
5,475,319 + PP_4812 0.33 +0.9
5,475,319 + PP_4812 0.33 +0.1
5,475,320 - PP_4812 0.33 -0.5
5,475,320 - PP_4812 0.33 +0.2
5,475,320 - PP_4812 0.33 +0.4
5,475,320 - PP_4812 0.33 +0.4
5,475,320 - PP_4812 0.33 -1.3
5,475,322 + PP_4812 0.33 +0.6
5,475,323 - PP_4812 0.33 +0.5
5,475,323 - PP_4812 0.33 -0.8
5,475,394 + PP_4812 0.44 -1.0
5,475,512 + PP_4812 0.62 -0.1
5,475,512 + PP_4812 0.62 +0.1
5,475,512 + PP_4812 0.62 -0.5
5,475,512 + PP_4812 0.62 -1.2
5,475,513 - PP_4812 0.62 +0.7
5,475,513 - PP_4812 0.62 +0.1
5,475,577 + PP_4812 0.71 +0.1
5,475,578 - PP_4812 0.71 +0.3
5,475,685 + PP_4812 0.87 -0.1

Or see this region's nucleotide sequence