Strain Fitness in Pseudomonas putida KT2440 around PP_4591

Experiment: Cholinium glutamate 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4589 and PP_4590 are separated by 2 nucleotidesPP_4590 and PP_4591 overlap by 4 nucleotidesPP_4591 and PP_4592 are separated by 177 nucleotides PP_4589: PP_4589 - D-isomer specific 2-hydroxyacid dehydrogenase family protein, at 5,207,776 to 5,208,708 _4589 PP_4590: PP_4590 - conserved protein of unknown function, at 5,208,711 to 5,209,004 _4590 PP_4591: PP_4591 - Ribonuclease D, at 5,209,001 to 5,210,134 _4591 PP_4592: PP_4592 - putative metal dependent hydrolase, at 5,210,312 to 5,211,949 _4592 Position (kb) 5209 5210 5211Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5208.092 kb on + strand, within PP_4589at 5208.093 kb on - strand, within PP_4589at 5208.093 kb on - strand, within PP_4589at 5208.093 kb on - strand, within PP_4589at 5208.138 kb on - strand, within PP_4589at 5208.228 kb on - strand, within PP_4589at 5208.283 kb on + strand, within PP_4589at 5208.284 kb on - strand, within PP_4589at 5208.391 kb on + strand, within PP_4589at 5208.391 kb on + strand, within PP_4589at 5208.391 kb on + strand, within PP_4589at 5208.392 kb on - strand, within PP_4589at 5208.392 kb on - strand, within PP_4589at 5208.396 kb on + strand, within PP_4589at 5208.396 kb on + strand, within PP_4589at 5208.396 kb on + strand, within PP_4589at 5208.396 kb on + strand, within PP_4589at 5208.396 kb on + strand, within PP_4589at 5208.396 kb on + strand, within PP_4589at 5208.397 kb on - strand, within PP_4589at 5208.397 kb on - strand, within PP_4589at 5208.397 kb on - strand, within PP_4589at 5208.397 kb on - strand, within PP_4589at 5208.397 kb on - strand, within PP_4589at 5208.397 kb on - strand, within PP_4589at 5208.398 kb on + strand, within PP_4589at 5208.398 kb on + strand, within PP_4589at 5208.398 kb on + strand, within PP_4589at 5208.398 kb on + strand, within PP_4589at 5208.398 kb on + strand, within PP_4589at 5208.398 kb on + strand, within PP_4589at 5208.398 kb on + strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.409 kb on - strand, within PP_4589at 5208.409 kb on - strand, within PP_4589at 5208.409 kb on - strand, within PP_4589at 5208.409 kb on - strand, within PP_4589at 5208.409 kb on - strand, within PP_4589at 5208.409 kb on - strand, within PP_4589at 5208.410 kb on + strand, within PP_4589at 5208.410 kb on + strand, within PP_4589at 5208.410 kb on + strand, within PP_4589at 5208.411 kb on - strand, within PP_4589at 5208.411 kb on - strand, within PP_4589at 5208.411 kb on - strand, within PP_4589at 5208.411 kb on - strand, within PP_4589at 5208.439 kb on + strand, within PP_4589at 5208.440 kb on - strand, within PP_4589at 5208.440 kb on - strand, within PP_4589at 5208.514 kb on + strand, within PP_4589at 5208.760 kb on + strand, within PP_4590at 5208.760 kb on + strand, within PP_4590at 5208.761 kb on - strand, within PP_4590at 5208.761 kb on - strandat 5208.761 kb on - strand, within PP_4590at 5208.945 kb on + strand, within PP_4590at 5208.945 kb on + strand, within PP_4590at 5208.945 kb on + strand, within PP_4590at 5208.949 kb on + strand, within PP_4590at 5208.949 kb on + strand, within PP_4590at 5208.949 kb on + strand, within PP_4590at 5208.949 kb on + strand, within PP_4590at 5208.949 kb on + strand, within PP_4590at 5208.949 kb on + strand, within PP_4590at 5208.950 kb on - strand, within PP_4590at 5208.950 kb on - strand, within PP_4590at 5208.950 kb on - strand, within PP_4590at 5208.950 kb on - strand, within PP_4590at 5208.950 kb on - strand, within PP_4590at 5208.950 kb on - strand, within PP_4590at 5208.956 kb on - strand, within PP_4590at 5208.956 kb on - strand, within PP_4590at 5208.956 kb on - strand, within PP_4590at 5208.956 kb on - strand, within PP_4590at 5208.983 kb on - strandat 5209.093 kb on - strandat 5209.420 kb on + strand, within PP_4591at 5209.420 kb on + strand, within PP_4591at 5209.427 kb on - strand, within PP_4591at 5209.481 kb on + strand, within PP_4591at 5209.481 kb on + strand, within PP_4591at 5209.482 kb on - strand, within PP_4591at 5209.482 kb on - strand, within PP_4591at 5209.482 kb on - strand, within PP_4591at 5209.606 kb on - strand, within PP_4591at 5209.606 kb on - strand, within PP_4591at 5209.606 kb on - strand, within PP_4591at 5209.776 kb on + strand, within PP_4591at 5209.777 kb on - strand, within PP_4591at 5210.164 kb on + strandat 5210.164 kb on + strandat 5210.164 kb on + strandat 5210.164 kb on + strandat 5210.164 kb on + strandat 5210.164 kb on + strandat 5210.165 kb on - strandat 5210.165 kb on - strandat 5210.165 kb on - strandat 5210.167 kb on - strandat 5210.167 kb on - strandat 5210.168 kb on + strandat 5210.169 kb on - strandat 5210.169 kb on - strandat 5210.262 kb on + strandat 5210.262 kb on + strandat 5210.262 kb on + strandat 5210.263 kb on - strandat 5210.263 kb on - strandat 5210.263 kb on - strandat 5210.263 kb on - strandat 5210.370 kb on + strandat 5210.380 kb on + strandat 5210.381 kb on - strandat 5210.381 kb on - strandat 5210.381 kb on - strandat 5210.381 kb on - strandat 5210.384 kb on + strandat 5210.384 kb on + strandat 5210.385 kb on - strandat 5210.385 kb on - strandat 5210.385 kb on - strandat 5210.385 kb on - strandat 5210.385 kb on - strandat 5210.487 kb on + strand, within PP_4592at 5210.487 kb on + strand, within PP_4592at 5210.487 kb on + strand, within PP_4592at 5210.488 kb on - strand, within PP_4592at 5210.488 kb on - strand, within PP_4592at 5210.516 kb on + strand, within PP_4592at 5210.517 kb on - strand, within PP_4592at 5210.517 kb on - strand, within PP_4592at 5210.517 kb on - strand, within PP_4592at 5210.548 kb on - strand, within PP_4592at 5210.574 kb on + strand, within PP_4592at 5210.574 kb on + strand, within PP_4592at 5210.574 kb on + strand, within PP_4592at 5210.574 kb on + strand, within PP_4592at 5210.607 kb on + strand, within PP_4592at 5210.607 kb on + strand, within PP_4592at 5210.608 kb on - strand, within PP_4592at 5210.680 kb on + strand, within PP_4592at 5210.681 kb on - strand, within PP_4592at 5210.682 kb on + strand, within PP_4592at 5210.683 kb on - strand, within PP_4592at 5210.683 kb on - strand, within PP_4592at 5211.069 kb on + strand, within PP_4592at 5211.069 kb on + strand, within PP_4592at 5211.069 kb on + strand, within PP_4592at 5211.069 kb on + strand, within PP_4592at 5211.069 kb on + strand, within PP_4592

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholinium glutamate 10 vol%
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5,208,092 + PP_4589 0.34 -1.0
5,208,093 - PP_4589 0.34 -0.6
5,208,093 - PP_4589 0.34 -0.6
5,208,093 - PP_4589 0.34 -0.2
5,208,138 - PP_4589 0.39 -3.0
5,208,228 - PP_4589 0.48 +1.6
5,208,283 + PP_4589 0.54 -0.5
5,208,284 - PP_4589 0.54 +0.4
5,208,391 + PP_4589 0.66 -0.7
5,208,391 + PP_4589 0.66 -0.5
5,208,391 + PP_4589 0.66 +1.4
5,208,392 - PP_4589 0.66 -0.2
5,208,392 - PP_4589 0.66 +0.0
5,208,396 + PP_4589 0.66 -0.1
5,208,396 + PP_4589 0.66 +0.3
5,208,396 + PP_4589 0.66 +0.6
5,208,396 + PP_4589 0.66 -0.5
5,208,396 + PP_4589 0.66 -0.8
5,208,396 + PP_4589 0.66 +0.7
5,208,397 - PP_4589 0.67 +0.2
5,208,397 - PP_4589 0.67 -0.1
5,208,397 - PP_4589 0.67 -0.3
5,208,397 - PP_4589 0.67 -0.6
5,208,397 - PP_4589 0.67 -1.1
5,208,397 - PP_4589 0.67 -0.3
5,208,398 + PP_4589 0.67 +0.2
5,208,398 + PP_4589 0.67 -0.0
5,208,398 + PP_4589 0.67 +0.9
5,208,398 + PP_4589 0.67 +0.4
5,208,398 + PP_4589 0.67 -0.7
5,208,398 + PP_4589 0.67 -0.3
5,208,398 + PP_4589 0.67 +0.2
5,208,399 - PP_4589 0.67 +1.4
5,208,399 - PP_4589 0.67 -1.7
5,208,399 - PP_4589 0.67 -0.4
5,208,399 - PP_4589 0.67 +0.5
5,208,399 - PP_4589 0.67 -0.8
5,208,399 - PP_4589 0.67 -0.3
5,208,399 - PP_4589 0.67 -0.4
5,208,399 - PP_4589 0.67 -0.2
5,208,408 + PP_4589 0.68 +0.4
5,208,408 + PP_4589 0.68 +1.6
5,208,408 + PP_4589 0.68 +0.0
5,208,408 + PP_4589 0.68 +0.6
5,208,408 + PP_4589 0.68 -0.1
5,208,408 + PP_4589 0.68 +1.1
5,208,408 + PP_4589 0.68 -0.2
5,208,408 + PP_4589 0.68 +0.6
5,208,408 + PP_4589 0.68 +0.3
5,208,408 + PP_4589 0.68 -0.2
5,208,409 - PP_4589 0.68 +0.1
5,208,409 - PP_4589 0.68 -0.1
5,208,409 - PP_4589 0.68 -0.1
5,208,409 - PP_4589 0.68 -0.9
5,208,409 - PP_4589 0.68 +0.6
5,208,409 - PP_4589 0.68 -1.5
5,208,410 + PP_4589 0.68 -0.6
5,208,410 + PP_4589 0.68 +0.5
5,208,410 + PP_4589 0.68 -1.0
5,208,411 - PP_4589 0.68 +0.1
5,208,411 - PP_4589 0.68 -1.8
5,208,411 - PP_4589 0.68 +0.4
5,208,411 - PP_4589 0.68 -0.0
5,208,439 + PP_4589 0.71 -0.4
5,208,440 - PP_4589 0.71 +0.5
5,208,440 - PP_4589 0.71 +2.2
5,208,514 + PP_4589 0.79 +0.2
5,208,760 + PP_4590 0.17 +0.0
5,208,760 + PP_4590 0.17 -0.2
5,208,761 - PP_4590 0.17 +0.1
5,208,761 - +0.6
5,208,761 - PP_4590 0.17 -0.6
5,208,945 + PP_4590 0.80 -0.6
5,208,945 + PP_4590 0.80 -2.7
5,208,945 + PP_4590 0.80 -0.5
5,208,949 + PP_4590 0.81 +0.3
5,208,949 + PP_4590 0.81 +0.6
5,208,949 + PP_4590 0.81 -0.7
5,208,949 + PP_4590 0.81 +0.8
5,208,949 + PP_4590 0.81 +1.6
5,208,949 + PP_4590 0.81 +1.1
5,208,950 - PP_4590 0.81 +0.8
5,208,950 - PP_4590 0.81 -0.5
5,208,950 - PP_4590 0.81 -1.7
5,208,950 - PP_4590 0.81 -1.2
5,208,950 - PP_4590 0.81 -0.5
5,208,950 - PP_4590 0.81 +0.5
5,208,956 - PP_4590 0.83 -0.3
5,208,956 - PP_4590 0.83 -0.1
5,208,956 - PP_4590 0.83 +0.0
5,208,956 - PP_4590 0.83 +0.9
5,208,983 - +0.5
5,209,093 - +0.6
5,209,420 + PP_4591 0.37 -2.1
5,209,420 + PP_4591 0.37 -1.5
5,209,427 - PP_4591 0.38 +1.0
5,209,481 + PP_4591 0.42 -1.0
5,209,481 + PP_4591 0.42 -0.7
5,209,482 - PP_4591 0.42 -0.3
5,209,482 - PP_4591 0.42 -0.9
5,209,482 - PP_4591 0.42 -1.3
5,209,606 - PP_4591 0.53 -1.6
5,209,606 - PP_4591 0.53 +1.3
5,209,606 - PP_4591 0.53 -0.5
5,209,776 + PP_4591 0.68 -1.5
5,209,777 - PP_4591 0.68 +0.0
5,210,164 + +0.5
5,210,164 + +0.0
5,210,164 + +0.4
5,210,164 + -0.1
5,210,164 + -1.1
5,210,164 + -0.0
5,210,165 - +0.1
5,210,165 - +0.3
5,210,165 - -0.8
5,210,167 - +0.4
5,210,167 - +0.2
5,210,168 + +0.8
5,210,169 - -0.1
5,210,169 - +0.1
5,210,262 + +0.1
5,210,262 + +0.1
5,210,262 + -0.5
5,210,263 - +0.8
5,210,263 - -0.8
5,210,263 - +0.1
5,210,263 - -0.5
5,210,370 + -0.6
5,210,380 + +0.1
5,210,381 - -0.3
5,210,381 - +0.0
5,210,381 - -0.8
5,210,381 - +0.0
5,210,384 + -0.1
5,210,384 + -0.1
5,210,385 - -1.4
5,210,385 - -1.2
5,210,385 - +0.8
5,210,385 - -1.4
5,210,385 - +1.6
5,210,487 + PP_4592 0.11 +0.4
5,210,487 + PP_4592 0.11 +0.7
5,210,487 + PP_4592 0.11 -0.4
5,210,488 - PP_4592 0.11 +0.2
5,210,488 - PP_4592 0.11 -1.5
5,210,516 + PP_4592 0.12 -0.6
5,210,517 - PP_4592 0.13 +0.1
5,210,517 - PP_4592 0.13 -0.8
5,210,517 - PP_4592 0.13 -0.1
5,210,548 - PP_4592 0.14 +0.3
5,210,574 + PP_4592 0.16 +0.3
5,210,574 + PP_4592 0.16 +0.4
5,210,574 + PP_4592 0.16 +0.5
5,210,574 + PP_4592 0.16 -1.0
5,210,607 + PP_4592 0.18 -0.7
5,210,607 + PP_4592 0.18 +0.4
5,210,608 - PP_4592 0.18 +0.3
5,210,680 + PP_4592 0.22 +0.1
5,210,681 - PP_4592 0.23 -0.1
5,210,682 + PP_4592 0.23 +0.1
5,210,683 - PP_4592 0.23 -0.2
5,210,683 - PP_4592 0.23 -0.3
5,211,069 + PP_4592 0.46 -0.5
5,211,069 + PP_4592 0.46 -0.4
5,211,069 + PP_4592 0.46 -0.4
5,211,069 + PP_4592 0.46 -0.2
5,211,069 + PP_4592 0.46 +0.2

Or see this region's nucleotide sequence