Experiment: Cholinium glutamate 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4517 and PP_4518 are separated by 7 nucleotides PP_4518 and PP_4519 are separated by 311 nucleotides PP_4519 and PP_4520 are separated by 62 nucleotides PP_4520 and PP_4521 are separated by 64 nucleotides
PP_4517: PP_4517 - conserved protein of unknown function, at 5,131,647 to 5,132,234
_4517
PP_4518: PP_4518 - conserved protein of unknown function, at 5,132,242 to 5,132,607
_4518
PP_4519: PP_4519 - Agglutination protein, at 5,132,919 to 5,134,277
_4519
PP_4520: PP_4520 - conserved protein of unknown function, at 5,134,340 to 5,134,939
_4520
PP_4521: PP_4521 - putative aerotaxis receptor, at 5,135,004 to 5,136,569
_4521
Position (kb) 5132
5133
5134
5135 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5132.300 kb on + strand, within PP_4518 at 5132.425 kb on + strand, within PP_4518 at 5132.425 kb on + strand, within PP_4518 at 5132.464 kb on + strand, within PP_4518 at 5132.465 kb on - strand, within PP_4518 at 5132.569 kb on + strand, within PP_4518 at 5132.569 kb on + strand, within PP_4518 at 5132.569 kb on + strand, within PP_4518 at 5132.570 kb on - strand, within PP_4518 at 5132.570 kb on - strand, within PP_4518 at 5132.570 kb on - strand, within PP_4518 at 5132.570 kb on - strand, within PP_4518 at 5132.570 kb on - strand, within PP_4518 at 5132.570 kb on - strand at 5132.683 kb on - strand at 5132.683 kb on - strand at 5132.691 kb on + strand at 5132.692 kb on - strand at 5132.692 kb on - strand at 5132.748 kb on + strand at 5132.749 kb on - strand at 5132.765 kb on - strand at 5132.767 kb on + strand at 5132.768 kb on - strand at 5132.788 kb on + strand at 5132.820 kb on + strand at 5132.820 kb on + strand at 5132.820 kb on + strand at 5132.820 kb on + strand at 5132.820 kb on + strand at 5132.821 kb on - strand at 5132.821 kb on - strand at 5132.821 kb on - strand at 5132.821 kb on - strand at 5132.848 kb on + strand at 5132.850 kb on + strand at 5132.850 kb on + strand at 5132.858 kb on - strand at 5132.915 kb on + strand at 5132.915 kb on + strand at 5132.915 kb on + strand at 5132.915 kb on + strand at 5132.915 kb on + strand at 5132.915 kb on + strand at 5132.915 kb on + strand at 5132.915 kb on + strand at 5132.916 kb on - strand at 5132.916 kb on - strand at 5132.950 kb on + strand at 5132.950 kb on + strand at 5132.951 kb on - strand at 5132.977 kb on + strand at 5132.977 kb on + strand at 5132.978 kb on - strand at 5132.978 kb on - strand at 5132.994 kb on - strand at 5133.022 kb on - strand at 5133.047 kb on + strand at 5133.048 kb on - strand at 5133.096 kb on + strand, within PP_4519 at 5133.097 kb on - strand, within PP_4519 at 5133.097 kb on - strand, within PP_4519 at 5133.097 kb on - strand, within PP_4519 at 5133.097 kb on - strand, within PP_4519 at 5133.097 kb on - strand, within PP_4519 at 5133.099 kb on + strand, within PP_4519 at 5133.099 kb on + strand, within PP_4519 at 5133.099 kb on + strand, within PP_4519 at 5133.100 kb on - strand, within PP_4519 at 5133.127 kb on - strand, within PP_4519 at 5133.155 kb on + strand, within PP_4519 at 5133.195 kb on + strand, within PP_4519 at 5133.196 kb on - strand, within PP_4519 at 5133.196 kb on - strand, within PP_4519 at 5133.196 kb on - strand, within PP_4519 at 5133.259 kb on + strand, within PP_4519 at 5133.282 kb on - strand, within PP_4519 at 5133.282 kb on - strand, within PP_4519 at 5133.295 kb on - strand, within PP_4519 at 5133.297 kb on + strand, within PP_4519 at 5133.297 kb on + strand, within PP_4519 at 5133.298 kb on - strand, within PP_4519 at 5133.298 kb on - strand, within PP_4519 at 5133.298 kb on - strand, within PP_4519 at 5133.666 kb on + strand, within PP_4519 at 5133.666 kb on + strand, within PP_4519 at 5133.666 kb on + strand, within PP_4519 at 5133.666 kb on + strand, within PP_4519 at 5133.667 kb on - strand, within PP_4519 at 5133.667 kb on - strand, within PP_4519 at 5133.711 kb on + strand, within PP_4519 at 5133.711 kb on + strand, within PP_4519 at 5133.712 kb on - strand, within PP_4519 at 5133.735 kb on + strand, within PP_4519 at 5133.735 kb on + strand, within PP_4519 at 5133.736 kb on - strand, within PP_4519 at 5133.736 kb on - strand, within PP_4519 at 5133.736 kb on - strand, within PP_4519 at 5133.837 kb on + strand, within PP_4519 at 5133.837 kb on + strand, within PP_4519 at 5133.837 kb on + strand, within PP_4519 at 5133.838 kb on - strand, within PP_4519 at 5133.838 kb on - strand, within PP_4519 at 5133.874 kb on + strand, within PP_4519 at 5133.875 kb on - strand, within PP_4519 at 5133.875 kb on - strand, within PP_4519 at 5133.875 kb on - strand, within PP_4519 at 5133.875 kb on - strand, within PP_4519 at 5134.009 kb on - strand, within PP_4519 at 5134.108 kb on - strand, within PP_4519 at 5134.205 kb on + strand at 5134.206 kb on - strand at 5134.206 kb on - strand at 5134.357 kb on + strand at 5134.357 kb on + strand at 5134.358 kb on - strand at 5134.358 kb on - strand at 5134.358 kb on - strand at 5134.373 kb on + strand at 5134.373 kb on + strand at 5134.374 kb on - strand at 5134.587 kb on + strand, within PP_4520 at 5134.588 kb on - strand, within PP_4520 at 5134.588 kb on - strand, within PP_4520 at 5134.588 kb on - strand, within PP_4520 at 5134.663 kb on - strand, within PP_4520 at 5134.663 kb on - strand, within PP_4520 at 5134.663 kb on - strand, within PP_4520 at 5134.663 kb on - strand, within PP_4520 at 5134.889 kb on + strand at 5134.890 kb on - strand at 5134.890 kb on - strand at 5135.031 kb on - strand at 5135.031 kb on - strand at 5135.038 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cholinium glutamate 10 vol% remove 5,132,300 + PP_4518 0.16 -1.0 5,132,425 + PP_4518 0.50 -0.9 5,132,425 + PP_4518 0.50 +0.5 5,132,464 + PP_4518 0.61 +1.1 5,132,465 - PP_4518 0.61 -0.8 5,132,569 + PP_4518 0.89 -0.0 5,132,569 + PP_4518 0.89 +0.7 5,132,569 + PP_4518 0.89 -0.1 5,132,570 - PP_4518 0.90 -0.4 5,132,570 - PP_4518 0.90 -0.1 5,132,570 - PP_4518 0.90 -0.6 5,132,570 - PP_4518 0.90 -0.7 5,132,570 - PP_4518 0.90 -0.3 5,132,570 - +1.0 5,132,683 - -0.8 5,132,683 - -0.5 5,132,691 + -0.6 5,132,692 - -0.2 5,132,692 - -1.6 5,132,748 + -0.0 5,132,749 - -1.2 5,132,765 - -2.3 5,132,767 + -1.0 5,132,768 - -0.1 5,132,788 + +0.2 5,132,820 + +0.2 5,132,820 + -1.2 5,132,820 + +0.3 5,132,820 + +0.2 5,132,820 + +0.6 5,132,821 - -0.8 5,132,821 - -0.8 5,132,821 - -1.7 5,132,821 - -1.2 5,132,848 + +0.3 5,132,850 + +0.4 5,132,850 + -0.6 5,132,858 - -1.6 5,132,915 + -0.5 5,132,915 + -0.9 5,132,915 + -1.0 5,132,915 + -1.0 5,132,915 + -0.7 5,132,915 + +0.0 5,132,915 + -0.9 5,132,915 + -1.6 5,132,916 - -3.3 5,132,916 - -0.5 5,132,950 + -0.9 5,132,950 + -0.5 5,132,951 - +0.1 5,132,977 + -0.6 5,132,977 + -0.8 5,132,978 - -0.3 5,132,978 - -1.5 5,132,994 - -0.6 5,133,022 - -1.0 5,133,047 + -0.4 5,133,048 - -1.5 5,133,096 + PP_4519 0.13 -0.5 5,133,097 - PP_4519 0.13 -0.6 5,133,097 - PP_4519 0.13 -0.1 5,133,097 - PP_4519 0.13 -0.9 5,133,097 - PP_4519 0.13 -0.7 5,133,097 - PP_4519 0.13 -1.8 5,133,099 + PP_4519 0.13 -2.1 5,133,099 + PP_4519 0.13 +1.6 5,133,099 + PP_4519 0.13 -1.1 5,133,100 - PP_4519 0.13 -1.2 5,133,127 - PP_4519 0.15 -1.2 5,133,155 + PP_4519 0.17 -1.0 5,133,195 + PP_4519 0.20 -0.3 5,133,196 - PP_4519 0.20 -0.5 5,133,196 - PP_4519 0.20 -0.4 5,133,196 - PP_4519 0.20 -1.7 5,133,259 + PP_4519 0.25 -1.2 5,133,282 - PP_4519 0.27 -1.1 5,133,282 - PP_4519 0.27 -0.7 5,133,295 - PP_4519 0.28 -0.8 5,133,297 + PP_4519 0.28 -0.6 5,133,297 + PP_4519 0.28 -1.2 5,133,298 - PP_4519 0.28 -1.3 5,133,298 - PP_4519 0.28 -0.5 5,133,298 - PP_4519 0.28 -2.7 5,133,666 + PP_4519 0.55 -1.0 5,133,666 + PP_4519 0.55 -1.4 5,133,666 + PP_4519 0.55 -0.0 5,133,666 + PP_4519 0.55 -0.3 5,133,667 - PP_4519 0.55 -0.7 5,133,667 - PP_4519 0.55 -1.1 5,133,711 + PP_4519 0.58 -2.2 5,133,711 + PP_4519 0.58 -0.9 5,133,712 - PP_4519 0.58 -0.4 5,133,735 + PP_4519 0.60 -1.1 5,133,735 + PP_4519 0.60 -0.9 5,133,736 - PP_4519 0.60 -0.5 5,133,736 - PP_4519 0.60 -0.5 5,133,736 - PP_4519 0.60 -0.6 5,133,837 + PP_4519 0.68 -0.7 5,133,837 + PP_4519 0.68 +0.0 5,133,837 + PP_4519 0.68 -0.2 5,133,838 - PP_4519 0.68 -0.4 5,133,838 - PP_4519 0.68 -0.5 5,133,874 + PP_4519 0.70 -0.7 5,133,875 - PP_4519 0.70 -0.5 5,133,875 - PP_4519 0.70 -0.2 5,133,875 - PP_4519 0.70 -0.4 5,133,875 - PP_4519 0.70 -1.4 5,134,009 - PP_4519 0.80 -1.0 5,134,108 - PP_4519 0.87 -0.2 5,134,205 + -0.7 5,134,206 - -0.4 5,134,206 - -0.9 5,134,357 + +0.1 5,134,357 + +0.3 5,134,358 - +0.6 5,134,358 - +0.6 5,134,358 - -1.0 5,134,373 + -0.8 5,134,373 + -0.0 5,134,374 - +0.8 5,134,587 + PP_4520 0.41 +0.2 5,134,588 - PP_4520 0.41 +0.4 5,134,588 - PP_4520 0.41 -0.7 5,134,588 - PP_4520 0.41 -0.3 5,134,663 - PP_4520 0.54 +0.0 5,134,663 - PP_4520 0.54 -0.0 5,134,663 - PP_4520 0.54 -0.7 5,134,663 - PP_4520 0.54 -0.1 5,134,889 + +0.3 5,134,890 - +0.5 5,134,890 - +0.2 5,135,031 - +0.4 5,135,031 - -0.4 5,135,038 + +0.9
Or see this region's nucleotide sequence