Strain Fitness in Pseudomonas putida KT2440 around PP_3110

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
3,520,829	+				-0.2
3,520,830	-				+1.5
3,520,982	+				-1.2
3,520,983	-				-0.6
3,520,983	-				-0.1
3,521,051	+				-0.8
3,521,133	+				+0.5
3,521,140	-				-0.5
3,521,369	+				+2.3
3,521,370	-				-0.0
3,521,671	-		PP_5583	0.51	+0.8
3,521,799	+		PP_5583	0.86	-0.1
3,521,931	-		PP_3110	0.58	-0.5
3,521,987	+		PP_3110	0.85	-0.1
3,521,988	-		PP_3110	0.85	-0.5
3,522,284	+				+0.5
3,522,284	+				-0.2
3,522,284	+				-1.5
3,522,345	-				+0.0
3,522,428	+				-0.5
3,522,428	+				+0.3
3,522,428	+				-0.7
3,522,537	-				-0.4