Strain Fitness in Pseudomonas putida KT2440 around PP_2584

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
2,948,897	+		PP_2582	0.69	-0.8
2,948,897	+		PP_2582	0.69	-0.3
2,948,898	-		PP_2582	0.69	-0.6
2,948,952	-		PP_2582	0.78	+0.8
2,949,070	+				+1.6
2,949,100	-				+0.9
2,949,100	-				+0.2
2,949,203	+				+0.8
2,949,204	-				+0.6
2,949,204	-				-0.3
2,949,221	+				+0.6
2,949,221	+				+0.9
2,949,222	-				-0.8
2,949,236	+		PP_2583	0.11	+0.2
2,949,237	-		PP_2583	0.11	-1.0
2,949,295	+		PP_2583	0.21	+0.5
2,949,296	-		PP_2583	0.22	+0.1
2,949,296	-		PP_2583	0.22	-0.3
2,949,316	+		PP_2583	0.25	-0.2
2,949,317	-		PP_2583	0.25	+0.7
2,949,361	-		PP_2583	0.33	-0.2
2,949,528	-		PP_2583	0.63	-0.0
2,949,641	+		PP_2583	0.83	-0.0
2,949,642	-		PP_2583	0.83	+0.3
2,949,642	-		PP_2583	0.83	-0.5
2,949,642	-		PP_2583	0.83	-0.1
2,949,751	+				+0.2
2,949,751	+				+0.3
2,949,751	+				-0.1
2,949,752	-				-1.5
2,949,752	-				-0.2
2,949,752	-				+0.1
2,949,964	+				-1.0
2,949,964	+				-0.3
2,949,965	-				+0.2
2,949,965	-				-0.4
2,950,091	-		PP_2584	0.18	-0.7
2,950,091	-		PP_2584	0.18	+0.4
2,950,103	-		PP_2584	0.19	-1.8
2,950,409	+		PP_2584	0.41	+0.4
2,950,409	+		PP_2584	0.41	-0.8
2,950,409	+		PP_2584	0.41	-0.4
2,950,410	-		PP_2584	0.41	-1.3
2,950,410	-		PP_2584	0.41	+0.3
2,950,479	+		PP_2584	0.46	+0.3
2,950,480	-				-1.0
2,950,819	+		PP_2584	0.71	-0.8
2,950,819	+		PP_2584	0.71	-0.5
2,950,819	+		PP_2584	0.71	-0.6
2,950,819	+		PP_2584	0.71	+0.2
2,950,819	+		PP_2584	0.71	+1.2
2,950,819	+		PP_2584	0.71	-0.0
2,950,819	+		PP_2584	0.71	-0.4
2,950,819	+		PP_2584	0.71	+0.3
2,950,819	+		PP_2584	0.71	-0.6
2,950,820	-		PP_2584	0.71	-0.8
2,950,820	-		PP_2584	0.71	+0.5
2,950,820	-		PP_2584	0.71	-0.8
2,950,820	-		PP_2584	0.71	-1.3
2,950,820	-		PP_2584	0.71	+0.3
2,950,821	+		PP_2584	0.71	-0.1
2,950,821	+		PP_2584	0.71	-0.3
2,950,821	+		PP_2584	0.71	-0.0
2,950,822	-		PP_2584	0.71	-0.4
2,950,822	-		PP_2584	0.71	-0.7
2,950,822	-		PP_2584	0.71	-1.3
2,950,822	-		PP_2584	0.71	-1.6
2,950,822	-		PP_2584	0.71	-0.4
2,950,822	-		PP_2584	0.71	-2.0
2,950,822	-		PP_2584	0.71	+0.1
2,950,822	-		PP_2584	0.71	+2.4
2,950,822	-		PP_2584	0.71	-0.1
2,950,822	-		PP_2584	0.71	-0.4
2,950,995	+		PP_2584	0.83	-1.3
2,950,995	+		PP_2584	0.83	-0.2
2,950,995	+		PP_2584	0.83	+0.1
2,950,996	-		PP_2584	0.84	+0.4
2,951,212	+				+0.8
2,951,212	+				+0.5
2,951,213	-				-0.8
2,951,213	-				+0.1
2,951,240	-				+0.0
2,951,280	+				-0.3
2,951,281	-				-0.2
2,951,302	+				+0.9
2,951,477	-				+1.1
2,952,161	+		PP_2585	0.49	-0.1