Strain Fitness in Pseudomonas putida KT2440 around PP_2302

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
2,629,605	+		PP_2301	0.42	+0.5
2,630,244	+				+0.3
2,630,244	+				+0.3
2,630,244	+				-0.3
2,630,244	+				+3.3
2,630,453	-				-1.0
2,630,477	+				+0.6
2,630,477	+				+1.5
2,630,477	+				-1.7
2,630,477	+				-0.3
2,630,478	-				+1.9
2,630,675	+				+0.9
2,630,675	+				-1.0
2,630,676	-				+1.3
2,630,676	-				+0.3
2,630,676	-				+1.6
2,630,945	-		PP_2302	0.17	+0.5
2,630,945	-		PP_2302	0.17	+2.9
2,631,387	+		PP_2302	0.36	+0.7
2,631,388	-		PP_2302	0.36	+0.3
2,631,404	-		PP_2302	0.36	-0.5
2,631,496	+		PP_2302	0.40	-1.5
2,631,496	+		PP_2302	0.40	-1.7
2,631,497	-		PP_2302	0.40	+1.3
2,631,533	-		PP_2302	0.42	+2.3
2,631,715	+		PP_2302	0.49	-1.0
2,631,715	+		PP_2302	0.49	-2.2
2,631,715	+		PP_2302	0.49	+1.3
2,631,715	+		PP_2302	0.49	-0.8
2,631,716	-		PP_2302	0.49	+0.5
2,631,716	-		PP_2302	0.49	-0.1
2,631,716	-		PP_2302	0.49	-0.7
2,631,904	+		PP_2302	0.57	+0.0
2,632,036	+		PP_2302	0.63	+0.3
2,632,036	+		PP_2302	0.63	-0.5
2,632,037	-		PP_2302	0.63	-2.0
2,632,037	-		PP_2302	0.63	+1.3
2,632,123	+		PP_2302	0.66	+0.5
2,632,124	-		PP_2302	0.66	+0.3
2,632,127	-		PP_2302	0.66	-0.7
2,632,127	-		PP_2302	0.66	-1.5
2,632,200	+		PP_2302	0.69	+0.4
2,632,201	-		PP_2302	0.69	-0.3
2,632,908	+				-0.1
2,632,930	+				-0.0
2,632,930	+				+1.1
2,632,930	+				+0.4
2,632,931	-				-0.4
2,632,981	+				+0.0
2,633,040	+				-1.1
2,633,044	+				+0.6
2,633,044	+				+0.4
2,633,048	+				+0.4
2,633,048	+				-0.3
2,633,048	+				+0.8
2,633,355	+				+1.1
2,633,355	+				-0.7
2,633,355	+				-1.3
2,633,356	-				+1.3
2,633,356	-				+1.3
2,633,440	+				-0.5
2,633,517	+				-0.4
2,633,518	-				-0.5
2,633,655	+				+1.3
2,633,655	+				-0.5
2,633,655	+				-0.3
2,633,655	+				-0.2