Strain Fitness in Pseudomonas putida KT2440 around PP_1787

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
2,002,516	+		PP_1786	0.71	+0.7
2,002,517	-		PP_1786	0.71	-1.1
2,002,533	-		PP_1786	0.72	+1.2
2,002,657	+		PP_1786	0.75	-0.9
2,002,705	+		PP_1786	0.77	+0.8
2,002,743	-		PP_1786	0.78	-0.4
2,002,753	-		PP_1786	0.78	+0.7
2,002,769	-		PP_1786	0.79	-0.4
2,002,946	-		PP_1786	0.84	-0.5
2,002,952	+		PP_1786	0.84	+0.3
2,002,968	+		PP_1786	0.84	+0.4
2,003,006	+		PP_1786	0.86	+0.9
2,003,010	-		PP_1786	0.86	+0.3
2,003,091	-		PP_1786	0.88	-0.1
2,003,169	-				+0.1
2,003,269	+				+0.1
2,003,305	+				-0.2
2,003,316	-				+1.0
2,003,343	+				-1.0
2,003,347	-				+0.1
2,003,356	-				-1.1
2,003,363	-				+0.1
2,003,453	+				-0.2
2,003,453	+				-0.9
2,003,672	-		PP_1787	0.17	-0.6
2,003,770	+		PP_1787	0.27	+0.5
2,003,892	+		PP_1787	0.39	-0.6
2,004,070	-		PP_1787	0.56	-0.6
2,004,113	-		PP_1787	0.61	-0.8
2,004,139	+		PP_1787	0.63	-0.3
2,004,255	-		PP_1787	0.75	-1.1
2,004,335	+		PP_1787	0.83	-1.1
2,004,527	+				+0.7
2,004,822	+		PP_1788	0.15	+0.8
2,004,860	-		PP_1788	0.19	-0.9
2,005,183	-		PP_1788	0.48	+0.4
2,005,420	-		PP_1788	0.70	-0.4