Strain Fitness in Pseudomonas putida KT2440 around PP_1757

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
1,959,008	+				-0.3
1,959,068	+				+0.9
1,959,082	+				+0.2
1,959,083	-				+0.1
1,959,177	+				+0.7
1,959,177	+				-0.4
1,959,178	-				+0.6
1,959,178	-				-0.1
1,959,277	-		PP_1756	0.11	+1.5
1,959,277	-		PP_1756	0.11	+0.5
1,959,277	-		PP_1756	0.11	-0.2
1,959,359	+		PP_1756	0.27	+0.5
1,959,359	+		PP_1756	0.27	+0.8
1,959,360	-		PP_1756	0.27	-0.8
1,959,360	-		PP_1756	0.27	+0.5
1,959,515	+		PP_1756	0.57	-1.4
1,959,515	+		PP_1756	0.57	+0.5
1,959,515	+		PP_1756	0.57	+0.9
1,959,564	-		PP_1756	0.66	-1.8
1,959,745	-				+0.6
1,959,745	-				+0.5
1,959,771	-				+0.2
1,959,858	+		PP_1757	0.35	-0.3
1,959,858	+		PP_1757	0.35	-0.4
1,959,859	-		PP_1757	0.36	-0.2
1,959,925	-		PP_1757	0.58	+0.1
1,959,925	-		PP_1757	0.58	-2.8
1,959,925	-		PP_1757	0.58	-1.0
1,959,925	-		PP_1757	0.58	+0.5
1,959,979	-		PP_1757	0.76	-1.1
1,959,979	-		PP_1757	0.76	-0.5
1,960,069	+				-0.2
1,960,070	-				+0.8
1,960,118	-				-1.0
1,960,146	+				-0.5
1,960,174	+				-0.5
1,960,174	+				-1.6
1,960,175	-				+0.5
1,960,208	-				-0.4
1,960,231	+				-1.1
1,960,232	-				-0.7
1,960,232	-				-1.0
1,960,232	-				-1.5
1,960,232	-				-0.5
1,960,232	-				+0.9
1,960,513	+		PP_1758	0.36	-0.6
1,960,513	+		PP_1758	0.36	+0.1
1,960,513	+		PP_1758	0.36	-1.0
1,960,513	+		PP_1758	0.36	+1.3
1,960,514	-		PP_1758	0.36	+2.6
1,960,514	-		PP_1758	0.36	-0.1
1,960,514	-		PP_1758	0.36	-1.8
1,960,514	-		PP_1758	0.36	-0.3
1,960,514	-		PP_1758	0.36	-2.0
1,960,514	-		PP_1758	0.36	-0.5
1,960,585	+		PP_1758	0.44	+0.1
1,960,585	+		PP_1758	0.44	-0.4
1,960,602	+		PP_1758	0.46	-1.0
1,960,603	-		PP_1758	0.46	+0.5
1,960,657	+		PP_1758	0.51	-1.9
1,960,658	-		PP_1758	0.52	-0.2
1,960,658	-		PP_1758	0.52	+1.5
1,960,744	+		PP_1758	0.61	+1.1
1,960,745	-		PP_1758	0.61	-0.9
1,960,745	-		PP_1758	0.61	+0.9
1,960,745	-		PP_1758	0.61	-0.9
1,960,745	-		PP_1758	0.61	+0.5
1,960,774	+		PP_1758	0.64	-0.4
1,960,775	-		PP_1758	0.64	+0.7
1,960,782	+		PP_1758	0.65	-0.4
1,960,801	+		PP_1758	0.67	+0.3