Strain Fitness in Pseudomonas putida KT2440 around PP_1575

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
1,764,410	+		PP_1573	0.43	-1.3
1,764,411	-		PP_1573	0.43	+0.7
1,764,411	-		PP_1573	0.43	-0.9
1,764,411	-		PP_1573	0.43	-0.2
1,764,411	-		PP_1573	0.43	+0.2
1,764,475	-		PP_1573	0.52	+0.1
1,764,591	+		PP_1573	0.68	+0.2
1,764,594	-		PP_1573	0.68	+0.3
1,764,594	-		PP_1573	0.68	-2.2
1,764,594	-		PP_1573	0.68	-0.2
1,764,606	-		PP_1573	0.70	+0.5
1,764,647	+		PP_1573	0.75	+2.2
1,764,647	+		PP_1573	0.75	-0.2
1,764,718	-		PP_1573	0.85	-1.6
1,764,944	+		PP_1574	0.23	+0.4
1,764,944	+		PP_1574	0.23	-0.4
1,764,944	+		PP_1574	0.23	+0.5
1,764,945	-		PP_1574	0.23	+0.3
1,764,945	-		PP_1574	0.23	-0.4
1,764,945	-		PP_1574	0.23	-0.4
1,765,000	+		PP_1574	0.35	+0.4
1,765,000	+		PP_1574	0.35	+0.3
1,765,085	-		PP_1574	0.53	+0.0
1,765,182	+		PP_1574	0.73	-0.3
1,765,183	-		PP_1574	0.74	+0.2
1,765,183	-		PP_1574	0.74	-0.0
1,765,183	-		PP_1574	0.74	-1.8
1,765,337	-				+0.2
1,765,337	-				-0.1
1,765,450	+		PP_1575	0.50	-0.8
1,765,451	-		PP_1575	0.51	-0.3
1,765,518	+				-0.0
1,765,519	-				+0.7
1,765,519	-				+0.8
1,765,519	-				-0.3
1,765,545	+				+0.5
1,765,559	+				-0.3
1,765,560	-				+0.1
1,765,560	-				-0.1
1,765,616	+				-0.2
1,765,616	+				+0.7
1,765,617	-				-0.3
1,765,633	-		PP_1576	0.13	-0.2
1,765,646	+		PP_1576	0.17	+0.6
1,765,646	+		PP_1576	0.17	+0.3
1,765,691	+		PP_1576	0.31	-0.9
1,765,759	-		PP_1576	0.52	-0.8
1,765,819	+		PP_1576	0.70	-0.7
1,765,820	-		PP_1576	0.70	-2.5
1,765,823	+		PP_1576	0.71	-0.1
1,765,823	+		PP_1576	0.71	+0.3
1,765,870	-		PP_1576	0.86	-0.0
1,765,908	+				+0.1
1,765,908	+				+1.5
1,765,944	+				-1.6
1,766,002	+				-1.0
1,766,011	+				-0.6
1,766,036	+				+0.4
1,766,037	-				-0.5
1,766,095	+				+1.0
1,766,095	+				-0.0
1,766,096	-				+0.1
1,766,099	+				+0.2
1,766,099	+				+0.1
1,766,099	+				+0.6
1,766,099	+				-1.5
1,766,099	+				-2.0
1,766,099	+				+0.2
1,766,099	+				+0.3
1,766,100	-				+0.6
1,766,100	-				+0.2
1,766,100	-				+1.2
1,766,191	+				+0.9
1,766,192	-				-1.0
1,766,233	+		PP_1577	0.11	+0.2
1,766,233	+		PP_1577	0.11	-0.2
1,766,233	+		PP_1577	0.11	-0.7
1,766,234	-		PP_1577	0.11	+0.4
1,766,254	+		PP_1577	0.12	+1.4
1,766,255	-		PP_1577	0.12	-0.1
1,766,260	+		PP_1577	0.12	-1.2
1,766,260	+		PP_1577	0.12	+0.1
1,766,260	+		PP_1577	0.12	+1.1
1,766,261	-		PP_1577	0.12	+0.5
1,766,308	+		PP_1577	0.14	+0.3
1,766,308	+		PP_1577	0.14	+0.4
1,766,308	+		PP_1577	0.14	+0.1
1,766,309	-		PP_1577	0.14	+0.9
1,766,309	-		PP_1577	0.14	-0.4
1,766,321	-		PP_1577	0.15	+0.3
1,766,321	-		PP_1577	0.15	+0.6
1,766,369	+		PP_1577	0.17	+0.0
1,766,404	+		PP_1577	0.18	-1.7
1,766,405	-		PP_1577	0.18	+0.4
1,766,430	+		PP_1577	0.19	+0.1
1,766,430	+		PP_1577	0.19	+1.1
1,766,431	-		PP_1577	0.19	-0.1
1,766,454	-		PP_1577	0.20	-1.3
1,766,481	+		PP_1577	0.21	+0.4
1,766,481	+		PP_1577	0.21	+1.1
1,766,482	-		PP_1577	0.21	+0.2
1,766,492	+		PP_1577	0.22	-1.3
1,766,492	+		PP_1577	0.22	+1.9