Strain Fitness in Pseudomonas putida KT2440 around PP_1490

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
1,693,104	+		PP_1488	0.74	-1.2
1,693,105	-		PP_1488	0.74	-1.4
1,693,173	+		PP_1488	0.78	-0.8
1,693,174	-				+0.9
1,693,174	-		PP_1488	0.78	-0.2
1,693,174	-		PP_1488	0.78	-1.4
1,693,174	-		PP_1488	0.78	-1.5
1,693,339	+		PP_1488	0.88	-1.1
1,693,339	+		PP_1488	0.88	-0.7
1,693,340	-				+0.3
1,693,340	-		PP_1488	0.88	-0.8
1,693,340	-		PP_1488	0.88	+1.8
1,693,340	-		PP_1488	0.88	-0.6
1,693,340	-		PP_1488	0.88	-1.5
1,693,458	+				-0.1
1,693,458	+				-1.2
1,693,459	-				+0.5
1,693,459	-				+0.3
1,693,459	-				-0.5
1,693,459	-				-0.5
1,693,587	-		PP_1489	0.11	-1.2
1,693,916	+		PP_1489	0.76	-1.3
1,693,917	-		PP_1489	0.76	+0.0
1,694,007	-				+0.5
1,694,007	-				+0.3
1,694,032	+				+0.3
1,694,032	+				+0.0
1,694,032	+				+0.2
1,694,032	+				+0.8
1,694,032	+				+0.2
1,694,032	+				-0.7
1,694,033	-				-0.6
1,694,033	-				-1.0
1,694,033	-				-0.8
1,694,033	-				-0.1
1,694,073	+				-0.9
1,694,167	+		PP_1490	0.10	+0.9
1,694,167	+		PP_1490	0.10	-1.1
1,694,168	-		PP_1490	0.10	+0.9
1,694,366	-		PP_1490	0.26	-1.1
1,694,366	-		PP_1490	0.26	-1.3
1,694,471	+		PP_1490	0.34	-1.3
1,694,471	+		PP_1490	0.34	+0.1
1,694,471	+		PP_1490	0.34	-0.3
1,694,471	+		PP_1490	0.34	-1.0
1,694,472	-		PP_1490	0.34	-0.2
1,694,472	-		PP_1490	0.34	-0.2
1,694,474	-		PP_1490	0.34	-0.4
1,694,522	-		PP_1490	0.38	-0.9
1,694,632	+		PP_1490	0.47	+0.3
1,694,632	+		PP_1490	0.47	-0.8
1,694,633	-		PP_1490	0.47	-1.3
1,694,633	-		PP_1490	0.47	-1.7
1,694,665	+		PP_1490	0.49	-1.1
1,694,665	+				+0.9
1,694,666	-		PP_1490	0.49	-1.0
1,694,666	-		PP_1490	0.49	-1.5
1,694,676	-		PP_1490	0.50	+0.8
1,694,676	-		PP_1490	0.50	-0.4
1,694,812	+		PP_1490	0.61	-0.8
1,694,813	-		PP_1490	0.61	-0.9
1,694,813	-		PP_1490	0.61	-1.0
1,695,058	-		PP_1490	0.80	-2.3
1,695,074	-		PP_1490	0.81	-0.0
1,695,107	-		PP_1490	0.84	-0.2
1,695,107	-		PP_1490	0.84	+0.5
1,695,107	-		PP_1490	0.84	+0.4
1,695,110	-		PP_1490	0.84	-1.4
1,695,110	-		PP_1490	0.84	-1.6
1,695,182	-				-0.3
1,695,444	+		PP_1491	0.19	+0.6
1,695,444	+		PP_1491	0.19	+0.8
1,695,444	+		PP_1491	0.19	+0.4
1,695,445	-		PP_1491	0.19	-0.9
1,695,445	-		PP_1491	0.19	-2.7
1,695,673	+		PP_1491	0.54	-0.1
1,695,767	+		PP_1491	0.68	-0.5
1,695,767	+		PP_1491	0.68	-0.7
1,695,767	+		PP_1491	0.68	-0.1
1,695,767	+		PP_1491	0.68	+0.9
1,695,767	+		PP_1491	0.68	+1.3
1,695,768	-		PP_1491	0.69	-0.9
1,695,768	-		PP_1491	0.69	-1.7
1,695,768	-		PP_1491	0.69	+0.5
1,695,768	-		PP_1491	0.69	-0.3
1,695,940	+				-0.5
1,695,940	+				+0.3
1,695,941	-				+0.4
1,696,237	+		PP_1492	0.12	-0.8
1,696,237	+		PP_1492	0.12	-0.4
1,696,237	+		PP_1492	0.12	-2.6
1,696,237	+		PP_1492	0.12	+0.5
1,696,238	-		PP_1492	0.12	+0.2
1,696,238	-		PP_1492	0.12	-0.2
1,696,238	-		PP_1492	0.12	-1.8
1,696,238	-		PP_1492	0.12	-3.3
1,696,277	-		PP_1492	0.13	+0.5
1,696,277	-		PP_1492	0.13	-0.8