Strain Fitness in Pseudomonas putida KT2440 around PP_0973

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
1,111,290	-				-0.5
1,111,350	+				+1.6
1,111,351	-				-0.1
1,111,370	+				-1.8
1,111,371	-				+0.1
1,111,371	-				-1.4
1,111,425	+				-0.8
1,111,425	+				-0.1
1,111,426	-				+0.8
1,111,535	+		PP_0971	0.31	-0.2
1,111,535	+		PP_0971	0.31	-0.3
1,111,536	-		PP_0971	0.31	+0.6
1,111,631	+		PP_0971	0.51	-1.6
1,111,631	+		PP_0971	0.51	+0.2
1,111,632	-		PP_0971	0.51	-2.6
1,111,632	-		PP_0971	0.51	-0.7
1,111,632	-		PP_0971	0.51	-0.9
1,111,635	+		PP_0971	0.52	-1.6
1,111,635	+		PP_0971	0.52	+0.6
1,111,635	+		PP_0971	0.52	-0.3
1,111,636	-		PP_0971	0.52	-0.3
1,111,636	-		PP_0971	0.52	+0.0
1,111,636	-		PP_0971	0.52	-0.2
1,111,636	-		PP_0971	0.52	+0.2
1,111,888	-				-0.7
1,111,903	+				+0.4
1,112,000	-		PP_0972	0.37	+0.3
1,112,032	+		PP_0972	0.47	-0.1
1,112,033	-		PP_0972	0.47	-0.8
1,112,033	-		PP_0972	0.47	+0.0
1,112,033	-		PP_0972	0.47	-0.2
1,112,033	-		PP_0972	0.47	-0.2
1,112,226	+				+0.3
1,112,226	+				+0.3
1,112,227	-				+0.5
1,112,373	+		PP_0973	0.22	-1.6
1,112,374	-				+0.6
1,112,460	+		PP_0973	0.31	-0.2
1,112,605	-		PP_0973	0.45	-0.9
1,112,648	-		PP_0973	0.50	-0.9
1,112,648	-		PP_0973	0.50	-0.5
1,112,648	-		PP_0973	0.50	-1.0
1,112,648	-		PP_0973	0.50	+0.3
1,112,776	+		PP_0973	0.62	-0.7
1,112,777	-		PP_0973	0.62	-0.6
1,112,803	-		PP_0973	0.65	-0.1
1,112,937	+		PP_0973	0.78	-1.4
1,112,938	-		PP_0973	0.78	-1.7
1,112,938	-		PP_0973	0.78	-1.7
1,112,938	-		PP_0973	0.78	+0.3
1,113,018	+		PP_0973	0.86	-0.1
1,113,018	+		PP_0973	0.86	-0.5
1,113,018	+		PP_0973	0.86	+0.7
1,113,019	-		PP_0973	0.87	-0.6
1,113,219	+				+0.8
1,113,220	-				-0.1
1,113,220	-				-0.2
1,113,232	-				-2.1
1,113,232	-				-0.1
1,113,299	+				-1.0
1,113,299	+				+0.3
1,113,300	-				-0.4
1,113,319	+				+0.7
1,113,319	+				-1.2
1,113,319	+				-0.1
1,113,420	+				-0.1
1,113,421	-				-0.1
1,113,421	-				+1.1
1,113,424	+				+0.7
1,113,424	+				-0.3
1,113,424	+				+0.8
1,113,425	-				+0.2
1,113,425	-				+0.7
1,113,425	-				+0.0
1,113,428	+				+1.6
1,113,428	+				+0.2
1,113,428	+				-0.4
1,113,428	+				+0.1
1,113,429	-				+0.3
1,113,429	-				+0.2
1,113,479	-				+0.6
1,113,491	-				-0.8
1,113,804	-				+0.4
1,113,804	-				+0.9
1,113,867	+				+1.0
1,113,868	-				-0.3
1,113,868	-				+0.6
1,113,965	-		PP_0976	0.12	-0.9
1,113,965	-		PP_0976	0.12	-0.1
1,114,048	+		PP_0976	0.20	+0.2
1,114,049	-		PP_0976	0.21	+0.1