Strain Fitness in Pseudomonas putida KT2440 around PP_0945

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
1,089,628	-		PP_0944	0.35	+0.4
1,089,657	+		PP_0944	0.37	+1.0
1,089,657	+		PP_0944	0.37	-1.1
1,089,658	-		PP_0944	0.38	-0.6
1,089,658	-		PP_0944	0.38	+0.6
1,089,658	-		PP_0944	0.38	+1.0
1,089,665	+		PP_0944	0.38	-0.0
1,089,665	+		PP_0944	0.38	+0.2
1,089,665	+		PP_0944	0.38	-0.1
1,089,665	+		PP_0944	0.38	+0.1
1,089,666	-		PP_0944	0.38	-0.7
1,089,666	-		PP_0944	0.38	-0.2
1,089,666	-		PP_0944	0.38	+0.0
1,089,682	+		PP_0944	0.39	-0.8
1,089,683	-		PP_0944	0.39	+0.8
1,089,683	-		PP_0944	0.39	+0.2
1,090,626	-		PP_0945	0.17	-0.4
1,090,626	-		PP_0945	0.17	-0.8
1,090,626	-		PP_0945	0.17	-1.3
1,090,766	+		PP_0945	0.47	-1.0
1,090,866	-		PP_0945	0.69	-0.2
1,090,974	+				-1.0
1,090,974	+				-0.1
1,090,975	-				-0.2
1,090,981	+				+1.3
1,090,982	-				-0.1
1,091,018	+				+1.2
1,091,018	+				+0.4
1,091,019	-				-0.7
1,091,019	-				+0.2
1,091,019	-				+0.7
1,091,037	+				-1.6
1,091,038	-				-0.1
1,091,112	+		PP_0946	0.19	+0.4
1,091,113	-		PP_0946	0.20	-0.8
1,091,113	-		PP_0946	0.20	+0.1
1,091,113	-		PP_0946	0.20	-0.4
1,091,444	+		PP_0946	0.72	+0.7
1,091,445	-		PP_0946	0.72	-0.0
1,091,517	+		PP_0946	0.83	+0.4
1,091,518	-		PP_0946	0.84	-0.2
1,091,518	-		PP_0946	0.84	+0.6
1,091,518	-		PP_0946	0.84	+1.0
1,091,518	-		PP_0946	0.84	+0.4
1,091,520	+		PP_0946	0.84	-1.4
1,091,520	+		PP_0946	0.84	+0.8
1,091,530	-		PP_0946	0.85	+0.4
1,091,551	-		PP_0946	0.89	+0.9
1,091,565	+				-0.2
1,091,565	+				-0.2
1,091,689	+				-0.1
1,091,690	-				+0.3
1,091,690	-				-0.3
1,091,745	+		PP_0947	0.14	+0.1
1,091,746	-		PP_0947	0.14	-0.0
1,091,842	+		PP_0947	0.25	-0.0
1,091,843	-		PP_0947	0.25	+0.8
1,091,863	+		PP_0947	0.27	-0.1